PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018444-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 337aa    MW: 37648 Da    PI: 6.2583
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018444-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-123583148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT  Ed +l ++++ +G++  W+  + + g++R++k+c++rw++yl
  PSME_00018444-RA 35 RGAWTGKEDMILSEYIRIHGNDgGWANLPTKAGLKRSGKSCRLRWLNYL 83
                      89*********************************************97 PP
2Myb_DNA-binding48.42.1e-1589134148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E+el+++++ +lG++ W++Ia +++  Rt++++k++w+++l
  PSME_00018444-RA  89 RGNISADEEELIIRLHSLLGNR-WSLIAGRLP-ERTDNEIKNYWNTHL 134
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3363083IPR017930Myb domain
SuperFamilySSF466897.65E-2433130IPR009057Homeodomain-like
SMARTSM007175.4E-103485IPR001005SANT/Myb domain
PfamPF002491.4E-113583IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-193690IPR009057Homeodomain-like
CDDcd001672.24E-63783No hitNo description
PROSITE profilePS5129425.12684138IPR017930Myb domain
SMARTSM007175.6E-1588136IPR001005SANT/Myb domain
PfamPF002491.0E-1389134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2491138IPR009057Homeodomain-like
CDDcd001674.37E-1193134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSVSSQHSRF PVWNSSRRIS IMDSSPCCSK EGLNRGAWTG KEDMILSEYI RIHGNDGGWA  60
NLPTKAGLKR SGKSCRLRWL NYLRPDIKRG NISADEEELI IRLHSLLGNR WSLIAGRLPE  120
RTDNEIKNYW NTHLSKKLLL MNQSSTTATN LKRRSKSPSI VQNHVLNTGP VKKTTVVTQS  180
QMVRSNSFNV YGCSNRDSHE GFKSCNVKET MNCSKPFSDL TAGTDLITNN DSQPIESKES  240
RNSTASMSSL VESGRSPDSD SCGGDATSLA ESLVDLNELS TPECNLLSYP SEFCTDFGLE  300
EFYTEPATLA AEAIFELDFN GNTQDLDWIF ELDYTQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-203313825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026452705.13e-68transcription factor MYB8-like
TrEMBLA0A167V9111e-119A0A167V911_PICAB; Transcription factor MYB31
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-61myb domain protein 3