PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018346-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 539aa    MW: 60991.2 Da    PI: 6.6282
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018346-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.11.1e-19323374355
           G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +++ t +LH++Fv+aveq+ G ++ +P+ ilelmkv+gL+ ++v SHLQkY +
  PSME_00018346-RA 323 KVERTMDLHRCFVQAVEQI-GVDQGIPSIILELMKVDGLSWHNVDSHLQKYHS 374
                       567799*************.*******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-18319377IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-16324375IPR006447Myb domain, plants
SuperFamilySSF466895.73E-10327377IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MPESKQLSAR NVRTLKMTED VLVVRLSPTG THIAVALLDS TIKKPISKDK LKNIWQHVVH  60
KEFCECGTVL SESLKPIKAI ILSMLHLGPE LANVKSAQNG DSSDGSKTEA SALHEVQYCT  120
HIPLDSVKQD TSIEPCNKQG GRSPYEEDKT LRLDDTKNFK AVTMHAGNNF EYETIRDLRL  180
DVESTSTWSF QVDSPASIKK ETQDMYRISL KTRNSSQCGL KSIDITSDQL GNEIDSRVTS  240
LHSRFETVDV QVVNAPSIAE EEVGSAEGSK SDDENIEKEA ILSSYTCNEE NVDSSIEYIK  300
GKKNNTEHDC KKSNIASSKK KLKVERTMDL HRCFVQAVEQ IGVDQGIPSI ILELMKVDGL  360
SWHNVDSHLQ KYHSHRRHIF PREDEVVRRR YWQNFDPAWT RTKQDEAWSC KGNPVAGPIL  420
GYSPVQLHPT PHGTLVGQPL HVWGHPTIDQ SYSHISYLQI MVTDKPQIQI QQYMVFQFNI  480
LQSLIHLIIM DLLYGKSPLM PKEVIDESFK ESLNNPWTPL PLDLKPPSME SVMAKLQRQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078841e-127BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.16e-26GOLDEN2-like 2