PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00018334-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 609aa MW: 67152.8 Da PI: 7.1566

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00018334-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.3	4.1e-34	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl PSME_00018334-RA 39 KPRLKWTPELHERFVDAVTQLGGPDKATPKSVMRVMGVKGLTLYHLKSHLQKYRL 93 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.568	36	96	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-33	37	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-16	38	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-24	39	94	IPR006447	Myb domain, plants
Pfam	PF00249	4.2E-9	41	92	IPR001005	SANT/Myb domain
Pfam	PF14379	9.1E-24	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MGMGLHRGQL PLSQRDHQRG LTIGNIGQDL GVVVSTDPKP RLKWTPELHE RFVDAVTQLG 60 GPDKATPKSV MRVMGVKGLT LYHLKSHLQK YRLGKQSCKE STSDTNKDGA SSDCNKGPNI 120 TGRDSNTRTN QKEAMHIAEA LNAQVEVQKR LHEQLEVQRC LQLRIEAQGK YLQTILEKAQ 180 QALIYQTSTP ARLGAEPAEL VEMVSNVATD CNETASFSRS SASSSLMDMP TQDEAHYERD 240 RSRAYLCDND ASIWHNEASV HDKLQDPSFN DNNGCIYKTD SEHELPQTRE FNVCSMANSM 300 WESNSHNSLL SSDSMKLIQA GQEQSYNENS LRIMDETVMK PTVERIASRI SLPEERLPML 360 VQPPNAHLFQ ACLSGHEQGL FKNYDPCPPS MLVKRRKAVE GLDLNIGGDQ GAPPQQGIQL 420 DLNTYGWGRI LPWFRFHSPG FLMIASRLQQ FTADGVLVEI GGLQLQSGVM GFPDLCSCPS 480 LLVSIQVSSA NGGAFDGGSD RSVLGGFNIA GAWSGVSDRF SPRRSCNRWG QCPSMSHHVR 540 HAAGLHRGEL DGSMLQSKIH REIMAEAVGS FSYPGFAGFK IKKCGWIKIG GLWLQELGAR 600 ASTVEVFGS

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MGMGLHRGQL PLSQRDHQRG LTIGNIGQDL GVVVSTDPKP RLKWTPELHE RFVDAVTQLG  60
GPDKATPKSV MRVMGVKGLT LYHLKSHLQK YRLGKQSCKE STSDTNKDGA SSDCNKGPNI  120
TGRDSNTRTN QKEAMHIAEA LNAQVEVQKR LHEQLEVQRC LQLRIEAQGK YLQTILEKAQ  180
QALIYQTSTP ARLGAEPAEL VEMVSNVATD CNETASFSRS SASSSLMDMP TQDEAHYERD  240
RSRAYLCDND ASIWHNEASV HDKLQDPSFN DNNGCIYKTD SEHELPQTRE FNVCSMANSM  300
WESNSHNSLL SSDSMKLIQA GQEQSYNENS LRIMDETVMK PTVERIASRI SLPEERLPML  360
VQPPNAHLFQ ACLSGHEQGL FKNYDPCPPS MLVKRRKAVE GLDLNIGGDQ GAPPQQGIQL  420
DLNTYGWGRI LPWFRFHSPG FLMIASRLQQ FTADGVLVEI GGLQLQSGVM GFPDLCSCPS  480
LLVSIQVSSA NGGAFDGGSD RSVLGGFNIA GAWSGVSDRF SPRRSCNRWG QCPSMSHHVR  540
HAAGLHRGEL DGSMLQSKIH REIMAEAVGS FSYPGFAGFK IKKCGWIKIG GLWLQELGAR  600
ASTVEVFGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-21	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-21	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-21	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-21	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ444608	0.0	JQ444608.1 Larix decidua isolate AcesapB08 anonymous locus 2_6130_01 genomic sequence.
GenBank	JQ444609	0.0	JQ444609.1 Larix decidua isolate AcesapB10 anonymous locus 2_6130_01 genomic sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	6e-67	G2-like family protein