PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018297-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 413aa    MW: 45987.6 Da    PI: 6.6153
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018297-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.82.8e-19226274251
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        +++Wt  +H+rFv+aveqL   ++ +P++ilelmkv+gLt ++v+SHLQ
  PSME_00018297-RA 226 LKVEWTMHMHRRFVQAVEQL-RVDQGIPSRILELMKVDGLTWHNVASHLQ 274
                       5899****************.9**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-18223274IPR009057Homeodomain-like
SuperFamilySSF466891.68E-11223275IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-17225275IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MLHLGPKLAN VKSAQNEDSS DGSKTKASTL HEVQSCTPIS TDSVKQDTSI EPCNSEKFLA  60
PSTPQLEQGG RSPSEEDKTL RLDDTTNFKA GTTHADNNCE YETIRELRLD AEATLAWSFQ  120
VDSPASVKKE TQDMYRISLK TRNSTQCGLK SVNITSDQLG NEITSRVTSL HSIFETVDVQ  180
VVNAPGIAEE EVGYAEDSST EDIKGKKNNT EHDCKKSNIA SSKKKLKVEW TMHMHRRFVQ  240
AVEQLRVDQG IPSRILELMK VDGLTWHNVA SHLQTILAAF YTAWTRTKED ETWSRKGNPA  300
TGPILGYSPV QLHPTPHGTP MGQPLHVWRH PTIDQSHSHM WQQLPVGTPT TWQAQDGSFW  360
KHRGPKEVID ESFKEALNNP WIALPLGLKP PSMESVMAEL QRQGISKIPP PAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078843e-53BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-26GBF's pro-rich region-interacting factor 1