PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018083-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 503aa    MW: 56098.1 Da    PI: 6.6777
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018083-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83.2e-10198234440
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                        k  rr+++NReAA++sR+RKka++++Le    +L++
  PSME_00018083-RA 198 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSRMKLSQ 234
                       6889*************************98777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-5195275IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082197241IPR004827Basic-leucine zipper domain
PfamPF001701.0E-7198238IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-6199241No hitNo description
Gene3DG3DSA:1.20.5.1708.5E-7201233No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
PfamPF141442.2E-33284358IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAGMADRGPN SQQRSSPEIS TWNKQILYGM LQGIPSPYAP NYLSNSGLES LKDENGTYDL  60
GELEQALILN LDAEEDHHPA GLAERQGFGS RPATLNIFPS WPMRFEASPK ATSQSADSTD  120
SGSAQYTASA CKADTQIELE SPINTRVQQE ALQVSDMAVN SSPTETSNEL EKDAQHETKR  180
RAPTSSSEHE AASKTLDAKT LRRLAQNREA AKKSRLRKKA YVQQLESSRM KLSQIEQDLQ  240
RARAQGVFHG AGFMGDQGYS GLSSGAAIFD MEYSRWLEEH HSRMCELKAA LQAHIPDNDL  300
RLLLDNCLRH YDEIFRLKSI AAKADVFHLV SGMWKTPAER CFMWMGGFRP SELLKILVPQ  360
LEPLTEPQFV GICNLQQSSQ QAEEALLQGM EALQQSLSET IISGSLCSPS NAASYMGQMA  420
TAMGKLTNLE GFVRQADNLR HQTLHQLHRL LTIRQAARCF LAIGEYFTRL RALSSLWAAR  480
PQEYYHEIIS SLQRSAHKYD KIG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0930265e-80FJ093026.1 Pinus taeda isolate 6586 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930295e-80FJ093029.1 Pinus taeda isolate 6582 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930315e-80FJ093031.1 Pinus taeda isolate 6596 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930325e-80FJ093032.1 Pinus taeda isolate 6595 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930335e-80FJ093033.1 Pinus taeda isolate 6594 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930345e-80FJ093034.1 Pinus taeda isolate 6597 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930355e-80FJ093035.1 Pinus taeda isolate 6590 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930365e-80FJ093036.1 Pinus taeda isolate 6580 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930375e-80FJ093037.1 Pinus taeda isolate 6584 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930385e-80FJ093038.1 Pinus taeda isolate 6589 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930395e-80FJ093039.1 Pinus taeda isolate 6585 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930405e-80FJ093040.1 Pinus taeda isolate 6591 anonymous locus 2_3041_01 genomic sequence.
GenBankFJ0930425e-80FJ093042.1 Pinus taeda isolate 6592 anonymous locus 2_3041_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020529591.11e-180transcription factor TGA2.2 isoform X1
SwissprotQ52MZ21e-177TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A0K0M7410.0A0A0K0M741_PINTB; ZIP2 (Fragment)
STRINGERN164831e-180(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-125bZIP family protein