PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018030-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 383aa    MW: 42067.8 Da    PI: 7.5864
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018030-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.94.3e-2692185185
          trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                       rWt+qe+l+Lie++r +e+r ++++            + +W+++s++++++g++r+p+qC+++w+nl+++ykki+++e+++ +++s  +++ +
  PSME_00018030-RA  92 RWTRQEILVLIEGKRVVESRGKKSRvtvdgqngqvNTESKWSSISSYCKRHGVSREPVQCRKRWSNLSGDYKKIRDWENSHVEQQS-FWAMRN 183
                       8*********************987777888888899*******************************************976665.788877 PP

          trihelix  84 ql 85 
                       ++
  PSME_00018030-RA 184 DI 185
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.63292159IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.5E-692158IPR009057Homeodomain-like
PfamPF138379.7E-1392179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTEFLPRHTY AAMAVESNGF AFKSPPDLLL SSPRNPNGKA SATEGKIPTG IPKPHAIGKE  60
EAAANGSNNP SSADHAGGDG SDGQDKTPRL PRWTRQEILV LIEGKRVVES RGKKSRVTVD  120
GQNGQVNTES KWSSISSYCK RHGVSREPVQ CRKRWSNLSG DYKKIRDWEN SHVEQQSFWA  180
MRNDIRRENK LPGFFDREVY SILDRFIGKQ DGGKETIRVM QEPIFDSGRP CGGGEDNLFS  240
DFEHSAEEEV AGSPDKEAAA MLDSPTTTAA TPPQLHRHDS LSLYCNPGAR TEKVPTPVAE  300
KGTASCASGQ KRKRTPSEEE SDGDLKDQLI AVLERNSRVL SAHVDAQILN CQLDRNQRKD  360
HADSLVGVLG KLADALGRIA DKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1067791e-128BT106779.1 Picea glauca clone GQ03010_F07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249232.11e-100PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A0D6QYM71e-129A0A0D6QYM7_ARACU; Uncharacterized protein
STRINGXP_010249232.11e-100(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-77Trihelix family protein