PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00017906-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 25070.1 Da PI: 4.6174 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.6 | 3.9e-10 | 54 | 91 | 8 | 47 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 E e++v v ++ W++Ia++++ gRt++++k++w+++ PSME_00017906-RA 54 EKEKIVVMVGDVDMR-WALIASKLP-GRTDNEIKNYWNTH 91 777788888888888.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.277 | 41 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-4 | 45 | 94 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.25E-8 | 54 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-14 | 54 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-7 | 54 | 92 | No hit | No description |
Pfam | PF00249 | 1.3E-7 | 54 | 91 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MNDDDVDDMN LFDPEETKAS GTNIDVEEIL VSQFPPVTQL GIEERDVCWG NIMEKEKIVV 60 MVGDVDMRWA LIASKLPGRT DNEIKNYWNT HVKRKMLQRG VDPYTHLSLK PHHGIFESSS 120 EINLLPKRGC KPNELLTDFF QQQSSVQKVY SSIHDNADDK DVNLELSISL PFLCTEQGAS 180 SNSNEFSSRI KPSNDCIQHD HKEEICCHIG LQTVGGSCCS GSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35515.1 | 7e-19 | high response to osmotic stress 10 |