PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017884-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 407aa    MW: 45952.5 Da    PI: 8.0056
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017884-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.5e-51551841128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++Pw+L  k++ +e+ewyfF+ rd+ky++g r+nra++sgyWkatg+dk++l
  PSME_00017884-RA  55 LPPGFRFHPTDEELVVHYLKKKASSTPLPV-TIIAEIDLYKFDPWELLGKATFGEQEWYFFILRDRKYPNGARPNRAATSGYWKATGTDKPIL 146
                       79****************************.89**************97888899************************************** PP

               NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++   ++++vg+ k Lvfy gr pkg kt+W+mheyrl
  PSME_00017884-RA 147 TStsgGTQKVGVNKALVFYGGRPPKGIKTNWIMHEYRL 184
                       998888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-6245214IPR003441NAC domain
PROSITE profilePS5100559.36955214IPR003441NAC domain
PfamPF023657.2E-2656184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAIPLCNISI TSASSSSSRF HFYRLSNSAI ALVLVVPKFC QNSDNLNFFV RIPQLPPGFR  60
FHPTDEELVV HYLKKKASST PLPVTIIAEI DLYKFDPWEL LGKATFGEQE WYFFILRDRK  120
YPNGARPNRA ATSGYWKATG TDKPILTSTS GGTQKVGVNK ALVFYGGRPP KGIKTNWIMH  180
EYRLADSGAR PSSFPNKKGS LRLDDWVLCR IYKKNGHSQR LQGAERDESP SADEVMTSLP  240
NIEQQNKLQL PKLGPFSGFL ETDDPFIEGL LNDEAIDGNG NISRLPHQVH SSDLSHNNFS  300
NSNDNNSDCQ FEVVPKQEAL AVDNENKFNS LKRTLSLAAF GDEEIHSAKR FNDMQNNYTY  360
NVNNNVSALL NSMQPNQTFQ QQNFLSTLSD SQQNFRLPYI QNMHWSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-705522020174NAC domain-containing protein 19
3swm_B4e-705522020174NAC domain-containing protein 19
3swm_C4e-705522020174NAC domain-containing protein 19
3swm_D4e-705522020174NAC domain-containing protein 19
3swp_A4e-705522020174NAC domain-containing protein 19
3swp_B4e-705522020174NAC domain-containing protein 19
3swp_C4e-705522020174NAC domain-containing protein 19
3swp_D4e-705522020174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111671e-168BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841705.11e-114NAC transcription factor 56
TrEMBLW1P8R51e-113W1P8R5_AMBTC; Uncharacterized protein
STRINGERN033801e-114(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-90NAC domain containing protein 25