PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017877-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 165aa    MW: 18065 Da    PI: 4.6994
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017877-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like43.76e-14128154127
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekA 27 
                       kprlrWt+eLHerFv+av+qLGG++ A
  PSME_00017877-RA 128 KPRLRWTTELHERFVDAVTQLGGPDSA 154
                       79***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-12125159IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-9128162IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MQAATEEGSD QSGNQIRISW GNSSCLSGPV FSEGQTETKD PLPGPFYIER QVGFSRKALY  60
YLLPEAGSPA ARHARKTAAE AYNRMYQVSN SSMPSLEKPP SFEETQGGPL EGTNLPGDAC  120
LVLTTDPKPR LRWTTELHER FVDAVTQLGG PDSAELMSIH EDYGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1021661e-130BT102166.1 Picea glauca clone GQ0167_M02 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-28G2-like family protein