PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017687-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 297aa    MW: 33691.6 Da    PI: 10.3705
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017687-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.2e-17189223135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+ C+t  T lWR+gpdg+k+LCnaCG++++k g+
  PSME_00017687-RA 189 CAECKTNRTLLWRNGPDGPKSLCNACGIRFKKIGK 223
                       ********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-13182230No hitNo description
SMARTSM004011.3E-15183235IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.596183219IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14185225IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.15E-10188222No hitNo description
PROSITE patternPS003440189214IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15189223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MLRGALCARQ MYGHNHYKKF WLKKMEEIED KQTQESLRTL QPEGFGSRIF WHSSESFRPS  60
LEIKDRIKST IRVSSVRSGA GSKNCERNLA ASEKDLPDGS EIHRALSIGM QMHMPYDADP  120
RNKPRKSVNI FPLQEEGHEE RKLQENGKKS SAKESLQSLR RFLHIGENRL VKTRAMDVEF  180
PDVAVARTCA ECKTNRTLLW RNGPDGPKSL CNACGIRFKK IGKREQQKAG SRLPSVSSVR  240
QMTVKRKQQD SDEYDLLPRD AAIVAPSHPL RKKSTATVTA APTANIFIKI CDLCLNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1028480.0BT102848.1 Picea glauca clone GQ0201_J20 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.19e-17GATA transcription factor 20