PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00017667-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 120aa MW: 13535.8 Da PI: 10.1128 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.9 | 1.5e-24 | 31 | 81 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien r+v f+kRr g+lKKA ELS+LCda v v+ifs +gkl eyss PSME_00017667-RA 31 KRIENAASRNVCFTKRRRGLLKKARELSILCDASVGVVIFSASGKLSEYSS 81 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-32 | 23 | 82 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-25 | 23 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.992 | 23 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-24 | 25 | 45 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-23 | 32 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-24 | 45 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-24 | 60 | 81 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MDGKLQVAKC LDSIRAIVVD TEMGRGKREM KRIENAASRN VCFTKRRRGL LKKARELSIL 60 CDASVGVVIF SASGKLSEYS STSEYVIPLL FPFRVFISNI ELALFRIHGN DSLFNIYSEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-15 | 23 | 82 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 8e-15 | 23 | 82 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 8e-15 | 23 | 82 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 8e-15 | 23 | 82 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 8e-15 | 23 | 82 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 8e-15 | 23 | 82 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 8e-15 | 23 | 82 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 8e-15 | 23 | 82 | 1 | 60 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro. {ECO:0000269|PubMed:10318690, ECO:0000269|PubMed:10662856, ECO:0000269|PubMed:12226488, ECO:0000269|PubMed:12743119, ECO:0000269|PubMed:14615187, ECO:0000269|PubMed:15084721, ECO:0000269|PubMed:15686521, ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18305206, ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19767455, ECO:0000269|PubMed:8953767}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (2,4-D). Feedback loop leading to direct down-regulation by itself. {ECO:0000269|PubMed:15686521}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ711074 | 2e-73 | KJ711074.1 Pinus tabuliformis clone PtMADS1 MADS1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025697643.1 | 2e-23 | MADS-box protein AGL42 | ||||
Swissprot | Q38847 | 1e-23 | AGL15_ARATH; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A0K0M7C6 | 1e-31 | A0A0K0M7C6_PINTB; MADS1 | ||||
STRING | evm.TU.contig_33612.1 | 4e-23 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 5e-26 | AGAMOUS-like 15 |