PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00017655-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 281aa MW: 32076.4 Da PI: 10.0972

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00017655-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.2	1.9e-50	36	162	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 p GfrF Ptdeelvv+yL+kk++++ l++ +i+evd+yk++Pw+L k+ +ekewyfF++rd+ky++g+r++ra+ sgyWkatg dk++ + PSME_00017655-RA 36 PLGFRFFPTDEELVVHYLCKKAASQILPV-PIIAEVDLYKYDPWQLLDKALFGEKEWYFFTPRDRKYPNGSRPKRAAGSGYWKATGADKPINA 127 78************************9.88**********86667799*********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl PSME_00017655-RA 128 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 162 966777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-56	29	164	IPR003441	NAC domain
PROSITE profile	PS51005	52.977	35	185	IPR003441	NAC domain
Pfam	PF02365	3.8E-26	36	162	IPR003441	NAC domain
Gene3D	G3DSA:3.20.20.80	1.6E-14	175	222	IPR013781	Glycoside hydrolase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGGIKGLGTI RVAIHLEELC KQARDHCALL VHNQWPLGFR FFPTDEELVV HYLCKKAASQ 60 ILPVPIIAEV DLYKYDPWQL LDKALFGEKE WYFFTPRDRK YPNGSRPKRA AGSGYWKATG 120 ADKPINAKGG KKRVGIKKAL VFYAGKAPKG SKTNWIMHEY RLADVSRPAR KKGSLRTLLT 180 RVNNITGIAY KDDPKIFASE LKNEPRCQSD PSGRTIQEFM NKENETPMPH LDSLAFLARK 240 EPIYVWMVKK LPGERKVIAL TYYTPTIVER KLEGEHCKEC V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-68	36	162	16	140	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394855.1	2e-79	PREDICTED: NAC domain-containing protein 68-like
Swissprot	Q39013	1e-74	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A0D6R3P9	5e-89	A0A0D6R3P9_ARACU; Uncharacterized protein
STRING	GSMUA_Achr4P02390_001	8e-79	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	4e-77	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]