PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017565-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 136aa    MW: 14828.7 Da    PI: 8.4778
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017565-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-08103135132
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 
                       +g WT+eEde+l++++ + G+   W+ +a+  g
  PSME_00017565-RA 103 KGVWTPEEDEKLLNYIGKNGNLgGWSYVAKQAG 135
                       799*****************9889*****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.17E-695133IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-996133IPR009057Homeodomain-like
PROSITE profilePS5129412.39398136IPR017930Myb domain
PfamPF002498.3E-6103135IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTTGEMENWV MATVRKRVAD NGEERGTGGR SAGATITAGQ NRHCSVLFIE HGTLSEIERL  60
DLGFSLSPSL ALNSTEREKM RYTQGQGVRE GVSANPSKPV LRKGVWTPEE DEKLLNYIGK  120
NGNLGGWSYV AKQAGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.11e-10myb domain protein 50