PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00017553-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 1295aa MW: 146382 Da PI: 9.218 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 313 | 358 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT++Ed++l+ v+ G ++W a+ +g++Rt+ qc sr+q PSME_00017553-RA 313 RSSWTKDEDKRLLIIVQNNGLHNWVYNANALGTNRTPSQCLSRYQR 358 789*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 44.3 | 4.1e-14 | 366 | 410 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+ WT+eEde+l +++ +G ++W +a+ m gRt+ qc +rw k PSME_00017553-RA 366 RKEWTEEEDEQLRSLIETFGENDWQIVAANME-GRTGAQCLNRWCK 410 789*****************************.***********86 PP | |||||||
3 | Myb_DNA-binding | 54.4 | 3e-17 | 420 | 464 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT eEd++l+ +v +G++tWk+Ia+ ++ gRt+ qc++rw ++ PSME_00017553-RA 420 GRWTVEEDKRLKLVVMVYGPKTWKKIAAFVP-GRTEVQCRERWCNV 464 8******************************.***********986 PP | |||||||
4 | Myb_DNA-binding | 44.1 | 4.9e-14 | 474 | 513 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++av ++G W+++a ++ Rt++qc+ rw PSME_00017553-RA 474 WTKEEDAKLKEAVSLHGYC-WAKVALFVP-PRTDNQCRRRWT 513 *****************99.*********.9**********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4 | 213 | 309 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.6 | 214 | 307 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-7 | 216 | 232 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-7 | 280 | 314 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-13 | 290 | 357 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.361 | 308 | 360 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.2E-4 | 312 | 362 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-6 | 313 | 358 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-10 | 315 | 361 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.58E-19 | 345 | 416 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.777 | 361 | 412 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-15 | 365 | 414 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 366 | 410 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-16 | 366 | 415 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.46E-12 | 368 | 410 | No hit | No description |
PROSITE profile | PS51294 | 24.534 | 413 | 469 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.88E-27 | 416 | 512 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 416 | 465 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 418 | 467 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 420 | 464 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-12 | 421 | 465 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-17 | 466 | 515 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 470 | 518 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 474 | 513 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.599 | 474 | 520 | IPR017930 | Myb domain |
CDD | cd00167 | 1.09E-11 | 474 | 515 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1295 aa Download sequence Send to blast |
SHDEKTDYKI EIFKDYSKFS TSVGDELYPN DLGSKLPAHA SEEEYGISEA IIASEYLQIT 60 DGSVIGKSPN GSIDGDINGP QPTNVVHVRK YAGIPEYARV LIEALKKNRL LQKNLRLKLV 120 QVETKMDENK ELRNRVKCLV DFQSACKRRL RQLFMQDSNS TVKLISRSKS RLSSKKLKET 180 ADNKVGNRCR GPPENEDVAK YKMALNSFPI IIERKRWSKK ERENLGNGIK QQLQETLVRQ 240 SMELLISQEN IEDLTLLDEQ ISDVSQIEVK SEDIRLFLPQ VDWERLASIY VASHSGADCQ 300 ARWLNNEDPL INRSSWTKDE DKRLLIIVQN NGLHNWVYNA NALGTNRTPS QCLSRYQRSL 360 NAYIMRKEWT EEEDEQLRSL IETFGENDWQ IVAANMEGRT GAQCLNRWCK SIHPDRKKVG 420 RWTVEEDKRL KLVVMVYGPK TWKKIAAFVP GRTEVQCRER WCNVIDPSLK LDGWTKEEDA 480 KLKEAVSLHG YCWAKVALFV PPRTDNQCRR RWTVLHPKEL AAAQKAGKIR KAALISNFVG 540 RKKERPTIGP SDFLPEQEGG SCSEANGDKG KEPSLRVRKR RRSSFTNDNL TEPRVMKRKK 600 ICHAIRQEDQ QKSSEVPIGQ NKSEQGAEKR VRRKRTKSVA VQESCNLDID DRRINECGTL 660 APTGQNKSEQ VAEKRVAEKR VRRKRTKSVA SQKSCRLDIN DRRINEFGTL ASLENQDHGL 720 ASANNNSDRF KSVLGIAGQT EEISSVVGDQ YGEVPVLCNS SDKKVIGKRM KLRDKARLVN 780 HMNSNGLFVA SMESAEAHLP CVKLGKRERT NRTKPLKDRS IDQEHDHETM QLVIPSNGLF 840 VAGVEDDEAH VSCGKLAKMP RTKRKKQLQK HRIVNWEQHD HETMQLTPSV PDGGSLQLAA 900 GSSSFRNDIV LHKHGENEIT SSISCIQGEG KTPVVSIESN KRVREKQYKS VKKGLDKQVP 960 LYRKQNVSAG KATHAKQEND DQEMMQVMMP ITDEQGNLNG MPIGVDGTEV SSYHLESEKL 1020 VLVNQTESAP KLNHTGWGKD DQGKSQFEAI LCTERTANNV SLAFASMVKE IANCCRHDRC 1080 QNEEILGLPA KQGLNPRKDY HLGSSYAAIK SSVEDGKEGC NSLDSFGVPD TVAGLRHADE 1140 KTVALAAKTI LSWPLYFGLQ DVFTNKLKGT EDHVNSIEER PGNTCHLGED DLHLGRLVPV 1200 PQAKNIEKLE NGQSENKGFQ LSSEDSTPKK DKMSLALADT ETCVKENINE KSEQANDVQP 1260 RRSRRAGRTD INYKDLLSGN VWPSLQDNRK QGRWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-33 | 282 | 512 | 2 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-33 | 282 | 512 | 2 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 577 | 581 | RKRRR |
2 | 577 | 582 | RKRRRS |
3 | 579 | 599 | RRRSSFTNDNLTEPRVMKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-122 | myb domain protein 4r1 |