PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017553-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 1295aa    MW: 146382 Da    PI: 9.218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017553-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08313358146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r +WT++Ed++l+  v+  G ++W   a+ +g++Rt+ qc sr+q 
  PSME_00017553-RA 313 RSSWTKDEDKRLLIIVQNNGLHNWVYNANALGTNRTPSQCLSRYQR 358
                       789*****************************************96 PP

2Myb_DNA-binding44.34.1e-14366410146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r+ WT+eEde+l  +++ +G ++W  +a+ m  gRt+ qc +rw k
  PSME_00017553-RA 366 RKEWTEEEDEQLRSLIETFGENDWQIVAANME-GRTGAQCLNRWCK 410
                       789*****************************.***********86 PP

3Myb_DNA-binding54.43e-17420464247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       grWT eEd++l+ +v  +G++tWk+Ia+ ++ gRt+ qc++rw ++
  PSME_00017553-RA 420 GRWTVEEDKRLKLVVMVYGPKTWKKIAAFVP-GRTEVQCRERWCNV 464
                       8******************************.***********986 PP

4Myb_DNA-binding44.14.9e-14474513445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eEd +l++av ++G   W+++a  ++  Rt++qc+ rw 
  PSME_00017553-RA 474 WTKEEDAKLKEAVSLHGYC-WAKVALFVP-PRTDNQCRRRWT 513
                       *****************99.*********.9**********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174213309IPR001005SANT/Myb domain
PROSITE profilePS500904.6214307IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.4E-7216232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-7280314IPR009057Homeodomain-like
SuperFamilySSF466891.88E-13290357IPR009057Homeodomain-like
PROSITE profilePS500909.361308360IPR017877Myb-like domain
SMARTSM007179.2E-4312362IPR001005SANT/Myb domain
PfamPF002492.2E-6313358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-10315361IPR009057Homeodomain-like
SuperFamilySSF466891.58E-19345416IPR009057Homeodomain-like
PROSITE profilePS5129415.777361412IPR017930Myb domain
SMARTSM007174.7E-15365414IPR001005SANT/Myb domain
PfamPF002492.2E-12366410IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-16366415IPR009057Homeodomain-like
CDDcd001676.46E-12368410No hitNo description
PROSITE profilePS5129424.534413469IPR017930Myb domain
SuperFamilySSF466893.88E-27416512IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-18416465IPR009057Homeodomain-like
SMARTSM007171.0E-15418467IPR001005SANT/Myb domain
PfamPF002491.2E-15420464IPR001005SANT/Myb domain
CDDcd001671.24E-12421465No hitNo description
Gene3DG3DSA:1.10.10.607.6E-17466515IPR009057Homeodomain-like
SMARTSM007171.7E-14470518IPR001005SANT/Myb domain
PfamPF002493.4E-13474513IPR001005SANT/Myb domain
PROSITE profilePS5129418.599474520IPR017930Myb domain
CDDcd001671.09E-11474515No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1295 aa     Download sequence    Send to blast
SHDEKTDYKI EIFKDYSKFS TSVGDELYPN DLGSKLPAHA SEEEYGISEA IIASEYLQIT  60
DGSVIGKSPN GSIDGDINGP QPTNVVHVRK YAGIPEYARV LIEALKKNRL LQKNLRLKLV  120
QVETKMDENK ELRNRVKCLV DFQSACKRRL RQLFMQDSNS TVKLISRSKS RLSSKKLKET  180
ADNKVGNRCR GPPENEDVAK YKMALNSFPI IIERKRWSKK ERENLGNGIK QQLQETLVRQ  240
SMELLISQEN IEDLTLLDEQ ISDVSQIEVK SEDIRLFLPQ VDWERLASIY VASHSGADCQ  300
ARWLNNEDPL INRSSWTKDE DKRLLIIVQN NGLHNWVYNA NALGTNRTPS QCLSRYQRSL  360
NAYIMRKEWT EEEDEQLRSL IETFGENDWQ IVAANMEGRT GAQCLNRWCK SIHPDRKKVG  420
RWTVEEDKRL KLVVMVYGPK TWKKIAAFVP GRTEVQCRER WCNVIDPSLK LDGWTKEEDA  480
KLKEAVSLHG YCWAKVALFV PPRTDNQCRR RWTVLHPKEL AAAQKAGKIR KAALISNFVG  540
RKKERPTIGP SDFLPEQEGG SCSEANGDKG KEPSLRVRKR RRSSFTNDNL TEPRVMKRKK  600
ICHAIRQEDQ QKSSEVPIGQ NKSEQGAEKR VRRKRTKSVA VQESCNLDID DRRINECGTL  660
APTGQNKSEQ VAEKRVAEKR VRRKRTKSVA SQKSCRLDIN DRRINEFGTL ASLENQDHGL  720
ASANNNSDRF KSVLGIAGQT EEISSVVGDQ YGEVPVLCNS SDKKVIGKRM KLRDKARLVN  780
HMNSNGLFVA SMESAEAHLP CVKLGKRERT NRTKPLKDRS IDQEHDHETM QLVIPSNGLF  840
VAGVEDDEAH VSCGKLAKMP RTKRKKQLQK HRIVNWEQHD HETMQLTPSV PDGGSLQLAA  900
GSSSFRNDIV LHKHGENEIT SSISCIQGEG KTPVVSIESN KRVREKQYKS VKKGLDKQVP  960
LYRKQNVSAG KATHAKQEND DQEMMQVMMP ITDEQGNLNG MPIGVDGTEV SSYHLESEKL  1020
VLVNQTESAP KLNHTGWGKD DQGKSQFEAI LCTERTANNV SLAFASMVKE IANCCRHDRC  1080
QNEEILGLPA KQGLNPRKDY HLGSSYAAIK SSVEDGKEGC NSLDSFGVPD TVAGLRHADE  1140
KTVALAAKTI LSWPLYFGLQ DVFTNKLKGT EDHVNSIEER PGNTCHLGED DLHLGRLVPV  1200
PQAKNIEKLE NGQSENKGFQ LSSEDSTPKK DKMSLALADT ETCVKENINE KSEQANDVQP  1260
RRSRRAGRTD INYKDLLSGN VWPSLQDNRK QGRWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-332825122159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-332825122159MYB PROTO-ONCOGENE PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1577581RKRRR
2577582RKRRRS
3579599RRRSSFTNDNLTEPRVMKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-122myb domain protein 4r1