PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017439-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 386aa    MW: 43680 Da    PI: 5.4076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017439-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.4e-121461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed ll + ++ +G g+W+  +++ g+ R++k+c++rw++yl
  PSME_00017439-RA 14 RGPWTAIEDSLLTRSIEWHGEGDWRNLPEKAGLLRCGKSCRLRWLNYL 61
                      89******************************99************97 PP
2Myb_DNA-binding49.41e-1567112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00017439-RA  67 RGNISSDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                       78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.698961IPR017877Myb-like domain
SuperFamilySSF466891.34E-2611108IPR009057Homeodomain-like
SMARTSM007173.5E-101363IPR001005SANT/Myb domain
PfamPF002491.5E-101461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-191568IPR009057Homeodomain-like
CDDcd001672.50E-81661No hitNo description
PROSITE profilePS5129425.16762116IPR017930Myb domain
SMARTSM007175.6E-1566114IPR001005SANT/Myb domain
PfamPF002494.5E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2469117IPR009057Homeodomain-like
CDDcd001678.03E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRAPCCSQL GLHRGPWTAI EDSLLTRSIE WHGEGDWRNL PEKAGLLRCG KSCRLRWLNY  60
LRPTIKRGNI SSDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKKLKKQG  120
IDPVTHKPLE SNYDHIHKNI GDDHNYENNK ASSIQDGEVQ NGPNEDLGQA PPQILLNGRE  180
SPSSGTLLMQ KSVLLPKTNR YMSFPPAINS MNNEDSEGIL DNHIKKSMQE TRDGLRHILD  240
EPMGLQTLYA DMSFKSDPWT ESSSCDSVLK MESPSSIGME LNEPKHEHHL LPLTDYYADD  300
SNQSSPNYLQ FCNLEGGSEF MIQNVFQDCS SLVLECNSMN PGKLSLSDIN LDSPHHKPSS  360
SVYEFEFEGV QWLCPIEGQV EDILTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22121165108B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAF43e-77A0A222UAF4_GINBI; R2R3MYB10
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-70myb domain protein 5