PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017434-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family M-type_MADS
Protein Properties Length: 392aa    MW: 43633.4 Da    PI: 10.0529
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017434-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.11.1e-2386136150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk.lyeys 50 
                       krien + rqvtfskRrn +lKK +ELSvLCdaev ++ifs++gk lye++
  PSME_00017434-RA  86 KRIENATSRQVTFSKRRNRLLKKTYELSVLCDAEVGLMIFSPRGKaLYEFA 136
                       79******************************************8799998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-3278138IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.93278139IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-2278139IPR002100Transcription factor, MADS-box
CDDcd002651.32E-3180138No hitNo description
PRINTSPR004041.5E-2180100IPR002100Transcription factor, MADS-box
PfamPF003195.9E-2287135IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-21100115IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-21115136IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSIDLLGFLL LSVVESVISV VPLPSICRFY NSMRAAFGKN TGTAGCNPVV LPPCAVSWDA  60
VTNSRASSNE QKRKGRRMVR GKTLMKRIEN ATSRQVTFSK RRNRLLKKTY ELSVLCDAEV  120
GLMIFSPRGK ALYEFANPRA LVLTVNVIAD KASAVATAKN EKNNIPLKVQ VHGIKIEPRP  180
AQSKERFPRP AKSSPYGSDT GFSNTSCLNQ LKEELSYASP IDELFKGLQM FRTVHKQTIS  240
QREKNQDCEG TGAFFSGCER ENTSHAAALA IAYLRIAANI KEMKEKKLNQ FCFTGVLDYR  300
PHFETQLPET VLGNYSAGIF QGTRVKDDIS FWDMARLISS KTEMEISKHK HFSELPVLAM  360
LVGQVIECPS LTPSSSKRSR LFTMFLGEPA ES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076QKRKGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.14e-27AGAMOUS-like 14