PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00017368-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 458aa MW: 50800.5 Da PI: 8.4377 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.9e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l ++++++G g W++ +++ g++R++++c+ rw +yl PSME_00017368-RA 14 RGAWSAQEDMILSEYIRLHGDGGWRKLPQKAGLNRCGNSCRIRWVNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l++ +++lG++ W++Ia +++ gRt++++k++w+++l PSME_00017368-RA 67 RGNISSDEEDLIIMMHRLLGNR-WSLIAGRLP-GRTDNEIKNHWNSHL 112 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.477 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.59E-26 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.83E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.257 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.89E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MVRSPCCSKE GLNRGAWSAQ EDMILSEYIR LHGDGGWRKL PQKAGLNRCG NSCRIRWVNY 60 LRPGIKRGNI SSDEEDLIIM MHRLLGNRWS LIAGRLPGRT DNEIKNHWNS HLSKKVSINR 120 SQTNNSQNLI KTCSKSPSVI QNHVLKSSTP IRIKSNYWVK HSEMVSPNGW SGSSCSNGRI 180 SSGDGFFKLS STIKESTSSS KSWCNLLVND SIREDDLAVT NPGLDDLDVN LVQIQDVTKY 240 SCSMFTSLAV QQSAHCDDFA EHADPLVESL CDLKELPSPQ CNMISSPSIS WTEFGFEEFC 300 MGPATSLGAK TAGFEGMYCN IDFPSANDQG IEETYGYNSQ HVRLHGLRLS SSWWQCLPRQ 360 RWGGVTVVSE ARVGRGYSGD FNFFIPVRRL LSGQVRVGRD YCGGCKSRSQ SDGFSVGGII 420 MVVLSFEPSL TVARWSSSWW KFLPSIVPLV VARGGAGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 1e-104 | B8LMJ6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-58 | myb domain protein 3 |