PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017368-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 458aa    MW: 50800.5 Da    PI: 8.4377
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017368-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-141461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W+++Ed +l ++++++G g W++ +++ g++R++++c+ rw +yl
  PSME_00017368-RA 14 RGAWSAQEDMILSEYIRLHGDGGWRKLPQKAGLNRCGNSCRIRWVNYL 61
                      89********************************************97 PP

2Myb_DNA-binding47.73.5e-1567112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E++l++  +++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00017368-RA  67 RGNISSDEEDLIIMMHRLLGNR-WSLIAGRLP-GRTDNEIKNHWNSHL 112
                       78999*****************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.477961IPR017930Myb domain
SuperFamilySSF466894.59E-2612108IPR009057Homeodomain-like
SMARTSM007175.4E-111363IPR001005SANT/Myb domain
PfamPF002494.4E-131461IPR001005SANT/Myb domain
CDDcd001679.83E-81661No hitNo description
PROSITE profilePS5129424.25762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-2365116IPR009057Homeodomain-like
SMARTSM007173.1E-1466114IPR001005SANT/Myb domain
PfamPF002493.4E-1367112IPR001005SANT/Myb domain
CDDcd001675.89E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MVRSPCCSKE GLNRGAWSAQ EDMILSEYIR LHGDGGWRKL PQKAGLNRCG NSCRIRWVNY  60
LRPGIKRGNI SSDEEDLIIM MHRLLGNRWS LIAGRLPGRT DNEIKNHWNS HLSKKVSINR  120
SQTNNSQNLI KTCSKSPSVI QNHVLKSSTP IRIKSNYWVK HSEMVSPNGW SGSSCSNGRI  180
SSGDGFFKLS STIKESTSSS KSWCNLLVND SIREDDLAVT NPGLDDLDVN LVQIQDVTKY  240
SCSMFTSLAV QQSAHCDDFA EHADPLVESL CDLKELPSPQ CNMISSPSIS WTEFGFEEFC  300
MGPATSLGAK TAGFEGMYCN IDFPSANDQG IEETYGYNSQ HVRLHGLRLS SSWWQCLPRQ  360
RWGGVTVVSE ARVGRGYSGD FNFFIPVRRL LSGQVRVGRD YCGGCKSRSQ SDGFSVGGII  420
MVVLSFEPSL TVARWSSSWW KFLPSIVPLV VARGGAGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-104B8LMJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-58myb domain protein 3