PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017214-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YC
Protein Properties Length: 305aa    MW: 34068.4 Da    PI: 4.7942
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017214-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC142.21.2e-443212114102
             NF-YC  14 tdfknhelPlarikkilkadedvk.misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102
                        +fk+h+lPlarikki+k+dedvk +isaeaP+l+skacelfileltlrswlh+eenkrrtl+++di+ a++r d+ dfl+divprde+k
  PSME_00017214-RA  32 PKFKQHQLPLARIKKIMKSDEDVKqVISAEAPILFSKACELFILELTLRSWLHTEENKRRTLQRNDITGAISRGDVLDFLLDIVPRDEVK 121
                       579********************8358************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.71E-2633133IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-3233102IPR009072Histone-fold
PfamPF008083.7E-1938101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNPYWLDGGC RPVAENLEHF PGAKLDSKIE IPKFKQHQLP LARIKKIMKS DEDVKQVISA  60
EAPILFSKAC ELFILELTLR SWLHTEENKR RTLQRNDITG AISRGDVLDF LLDIVPRDEV  120
KEVDNGCTDY LPDTPDGFAE EPRIPEKDSP PDDEYGGHWP GIPPAESMSY GGIHFPVMHA  180
QPNHHNLNPH MMTAQQAMSQ QLIPHQPLMP DQQLMYQPPQ GIVDGDPAER FYTGAAYCPV  240
GKDIVDGDPA ERFYSGVAYC PVGERSYTGS AYCPIGEYRT TSAAANQKAP VATTDLPSLP  300
SENRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B9e-42341171395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995RRTLQRN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0850831e-110EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369382.11e-57nuclear transcription factor Y subunit C-2-like
TrEMBLA9NUT04e-92A9NUT0_PICSI; Uncharacterized protein
STRINGPP1S315_9V6.34e-57(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.26e-47nuclear factor Y, subunit C4