PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017142-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 817aa    MW: 91144.8 Da    PI: 8.8228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017142-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05222244123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++C++ F r  nL+ H r+H
  PSME_00017142-RA 222 YVCEICNQGFQRDQNLQMHRRRH 244
                       9*********************9 PP
2zf-C2H213.40.00022299321123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ C+k +  +s++k H++t+
  PSME_00017142-RA 299 WKCERCSKGYAVQSDYKAHLKTC 321
                       58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-5221244No hitNo description
Gene3DG3DSA:3.30.160.603.7E-5221244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97222244IPR007087Zinc finger, C2H2
SMARTSM003550.0052222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
SMARTSM00355150263293IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4290320IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-5294319No hitNo description
SMARTSM0035579299326IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
GACDRSDPYL LGYARNGSRE GDHPRFLFVL GGSEIGKTVD GGRKKGFDRF NMDPGNGRPD  60
PSHKHTYRQS DEGRIVLELN INFAPPRSPC STNYGNRRKA CRLSLGPLYL SSAYTVGRRC  120
AVSGWTCSPS AQTLFNQSRS HEAFSSLFDM TTASGTSGSL HGTSLDIQAV QGFHSSSLQT  180
SSHFPVSPNN SNKRKRRPAG TPDPDAEVVA LSPKTLMESD RYVCEICNQG FQRDQNLQMH  240
RRRHKVPWKL LKRPTPEVRK RVYVCPDTTC LHNDPCHALG DLVGIKKHFR RKHSIEKQWK  300
CERCSKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDNCIKA KERAAFGYSD  360
QPSLPSLTAR TSSSNDTLSA TRSGISSAGK QFDSTTFHEQ VVWLNMEQRE LQFLPANRQY  420
NNSETAIPST NNTAAVARDH FISSATHQRS NPVTSPAKER ICPEDSTLRL QLSIGLCNDL  480
PENHEKKPHV KPDHFTAVSQ RQASNRSGTQ RALALSLYSN DSFPGNENVE GAEAAMTDVF  540
STSSRPVDHY EASVINDTGS SGAMVEKGFS DSPNKRRKEL SLFEALWPGH MVRRDSEEVQ  600
APVSLPWKST RAQIPAPPIP ETRQGENQSR YVLGHMAEAI ANVESMSSQS QDVERTQLVN  660
PWSDIAAARL AKEQAQQERD EAQSHMAGAE LLKHQVREQL RHASAEKAYA EHARDLAKKQ  720
IELAEAEFAA ARRIQEQAQA QLAKAQLLKE HATRRIDETR LEITCQACRQ QFLCHTLPSW  780
QPDQSSNKIP MLLPVEYPSA SNFSRTSLFH NGLKKEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-19296355463Zinc finger protein JACKDAW
5b3h_F7e-19296355463Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-100C2H2-like zinc finger protein