PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00017053-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 33313.5 Da PI: 9.8105 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.3 | 1e-51 | 28 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptdeelvv+yL+kk++++ +++ +i+evd+yk++Pw+Lp k+ +ekewyfF++rd+ky++g+r++ra+ sgyWkatg dk++ + PSME_00017053-RA 28 PPGFRFFPTDEELVVHYLCKKAASQIIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPNGSRPKRAAGSGYWKATGADKPINA 119 8****************************.88***************8777899*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+k+ Lvfy g+apkg+kt+W+mheyrl PSME_00017053-RA 120 KgGKKRVGIKQALVFYAGKAPKGSKTNWIMHEYRL 154 966777***************************98 PP | |||||||
2 | NAM | 87.3 | 2.9e-27 | 211 | 290 | 2 | 82 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 ppGfrF Ptdeelvv+yL+kk++++ +++ +i+evd+yk++Pw+Lp k+ +ekewyfF++ d+ky++g+r++ra+ sgy PSME_00017053-RA 211 PPGFRFFPTDEELVVHYLCKKAASQIIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPCDRKYPNGSRRKRAAGSGY 290 8****************************.88***************8777899**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-57 | 21 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.057 | 27 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-26 | 28 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.98E-32 | 204 | 290 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.714 | 210 | 290 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-11 | 211 | 290 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGTSLGDFHE EQPWILKNMD CHEHNQWPPG FRFFPTDEEL VVHYLCKKAA SQIIPVPIIA 60 EVDLYKYDPW QLPDKALFGE KEWYFFTPRD RKYPNGSRPK RAAGSGYWKA TGADKPINAK 120 GGKKRVGIKQ ALVFYAGKAP KGSKTNWIMH EYRLADVSRP ARKKGSLRIP SSLCVMGRIK 180 GLGTIRVAIH LEELCKQARD HCALLVHNQW PPGFRFFPTD EELVVHYLCK KAASQIIPVP 240 IIAEVDLYKY DPWQLPDKAL FGEKEWYFFT PCDRKYPNGS RRKRAAGSGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-69 | 16 | 290 | 6 | 154 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-69 | 16 | 290 | 6 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-69 | 16 | 290 | 6 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-69 | 16 | 290 | 6 | 154 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-69 | 16 | 290 | 9 | 157 | NAC domain-containing protein 19 |
3swm_B | 3e-69 | 16 | 290 | 9 | 157 | NAC domain-containing protein 19 |
3swm_C | 3e-69 | 16 | 290 | 9 | 157 | NAC domain-containing protein 19 |
3swm_D | 3e-69 | 16 | 290 | 9 | 157 | NAC domain-containing protein 19 |
3swp_A | 3e-69 | 16 | 290 | 9 | 157 | NAC domain-containing protein 19 |
3swp_B | 3e-69 | 16 | 290 | 9 | 157 | NAC domain-containing protein 19 |
3swp_C | 3e-69 | 16 | 290 | 9 | 157 | NAC domain-containing protein 19 |
3swp_D | 3e-69 | 16 | 290 | 9 | 157 | NAC domain-containing protein 19 |
4dul_A | 4e-69 | 16 | 290 | 6 | 154 | NAC domain-containing protein 19 |
4dul_B | 4e-69 | 16 | 290 | 6 | 154 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. Regulates leaf senescence through the modulation of the expression of senescence-associated genes SGR1/NYE1, SAG113 and SAUR36/SAG201, which are involved in chlorophyll degradation, and abscisic acid (ABA) and auxin promotion of senescence, respectively. Promotes reactive oxygen species (ROS) production during age-dependent and stress-induced senescence. Regulates positively auxin-mediated responses in roots (PubMed:27388337). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:26518251). Induced by salinity and osmotic stress, and during leaf senescence (PubMed:27388337). {ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026426066.1 | 3e-79 | NAC domain-containing protein 68-like | ||||
Swissprot | Q39013 | 6e-76 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
Swissprot | Q9CAR0 | 3e-76 | NAC32_ARATH; NAC transcription factor 32 | ||||
TrEMBL | A0A0D6R3P9 | 5e-90 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | Gorai.010G051900.1 | 3e-78 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-78 | NAC domain containing protein 32 |