PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00016871-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | BES1 | ||||||||
Protein Properties | Length: 186aa MW: 20846.2 Da PI: 10.1886 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 132.6 | 4.4e-41 | 90 | 177 | 6 | 93 |
DUF822 6 kptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 ++++kE+E++k+RER+RRai+++i++GLR++Gny lp+raD+n+V++AL+reAGw+v+ DGttyr + + + ++a s++ s+ PSME_00016871-RA 90 REREKEKERTKLRERQRRAITSRILSGLRQYGNYTLPARADINDVIAALAREAGWTVDSDGTTYRSQAHTPYPVKVAALSSTSLAGSP 177 6899*************************************************************65555534444444444333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.1E-39 | 90 | 183 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
TRRRRSFHTS YILRLQEIGS CDGISLFRGP SMDMVDQAHT VMSTSAIKRD EDDQELLNQQ 60 REQEQEEQGQ GNVQQVLVPA GNATVKRRIR EREKEKERTK LRERQRRAIT SRILSGLRQY 120 GNYTLPARAD INDVIAALAR EAGWTVDSDG TTYRSQAHTP YPVKVAALSS TSLAGSPGSS 180 ASLRST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-11 | 108 | 170 | 391 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-11 | 108 | 170 | 391 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-11 | 108 | 170 | 391 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-11 | 108 | 170 | 391 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116749 | 0.0 | BT116749.1 Picea glauca clone GQ03805_P11 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007220223.1 | 2e-30 | beta-amylase 7 | ||||
Refseq | XP_008232902.1 | 2e-30 | PREDICTED: beta-amylase 7 | ||||
Refseq | XP_021800260.1 | 2e-30 | beta-amylase 7-like isoform X1 | ||||
TrEMBL | M5X5T9 | 5e-29 | M5X5T9_PRUPE; Beta-amylase | ||||
TrEMBL | M5X7F8 | 4e-29 | M5X7F8_PRUPE; Beta-amylase | ||||
STRING | XP_008232902.1 | 8e-30 | (Prunus mume) | ||||
STRING | EMJ21422 | 8e-30 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.1 | 1e-22 | beta-amylase 2 |