PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00016485-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22084.8 Da PI: 10.6191 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.4 | 3.5e-50 | 36 | 162 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptdeelvv+yL+kk +++ +++ +i+evd+yk++Pw+Lp+k+ +ekewyfF++r++ky++g+r++r++ s yWkatg dk++ + PSME_00016485-RA 36 PPGFRFFPTDEELVVHYLCKKETSQIIPV-PIIAEVDLYKYDPWQLPNKALFGEKEWYFFTPRNRKYPNGSRPKRTAGSRYWKATGVDKPINA 127 9****************************.88***************8888899*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+kk Lvfy g+apkg+kt+W+mhey+l PSME_00016485-RA 128 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYHL 162 966777****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-55 | 29 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.645 | 35 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-25 | 36 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MGGIKGLGTI RVAIHLKELC KQARDHCALL VHNQWPPGFR FFPTDEELVV HYLCKKETSQ 60 IIPVPIIAEV DLYKYDPWQL PNKALFGEKE WYFFTPRNRK YPNGSRPKRT AGSRYWKATG 120 VDKPINAKGG KKRVGIKKAL VFYAGKAPKG SKTNWIMHEY HLANVSRPAR KKGSLRVSWS 180 ISSLLCFESA VLTT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-68 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swm_B | 3e-68 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swm_C | 3e-68 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swm_D | 3e-68 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swp_A | 3e-68 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swp_B | 3e-68 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swp_C | 3e-68 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
3swp_D | 3e-68 | 30 | 178 | 15 | 158 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268987.1 | 1e-75 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 3e-73 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0D6R3P9 | 2e-87 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_008792530.1 | 8e-75 | (Phoenix dactylifera) | ||||
STRING | XP_010268987.1 | 5e-75 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-75 | NAC family protein |