PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00016379-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 22135.5 Da PI: 9.6954 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.6 | 2.8e-11 | 37 | 76 | 52 | 91 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +++ +w+fF++ d+ky++g+r+nra++++yWkatg PSME_00016379-RA 37 PSKDLQWHFFCPYDRKYPNGSRTNRAIEASYWKATGFFCL 76 456779*****************************97544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-10 | 37 | 72 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MKDCSNIIFL KQVIILQVSL IFSYLLYPKV SDKICIPSKD LQWHFFCPYD RKYPNGSRTN 60 RAIEASYWKA TGFFCLMPRR QEKRIRNKKF SKPETPSATF NDMTKDSNAI ERWLDVLLDD 120 LDQNVSLTSP VESKNNTKSM LDSMTKRGKK KSKIVDYDSN EKFFGVAPIP RIAIIDEDTK 180 AVTGVDPEFK SG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 9e-16 | NAC domain containing protein 28 |