PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00016378-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 283aa MW: 32436.4 Da PI: 5.7492

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00016378-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.2	3.9e-54	23	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGf FhPtdeelv +yLk+kv+g+k+el ++i+evdiyk+ePwdLp k ++ +++ +w+fF++rd+ky++g+r+nrat+++yWkatg+d++ PSME_00016378-RA 23 LPPGFGFHPTDEELVAYYLKRKVQGHKIEL-DIIPEVDIYKCEPWDLPdKiCIPSKDLQWHFFCPRDRKYPNGSRTNRATEASYWKATGRDRK 114 79**************************.99***********5346777888******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s ++ ++g+kktLvf++grap ge+tdWvmheyrl PSME_00016378-RA 115 VNS-QRGKIGTKKTLVFHRGRAPFGERTDWVMHEYRL 150 .7779**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-60	17	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.514	23	172	IPR003441	NAC domain
Pfam	PF02365	2.3E-27	24	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MKDCSNIIFL KQISFNLMVP ISLPPGFGFH PTDEELVAYY LKRKVQGHKI ELDIIPEVDI 60 YKCEPWDLPD KICIPSKDLQ WHFFCPRDRK YPNGSRTNRA TEASYWKATG RDRKVNSQRG 120 KIGTKKTLVF HRGRAPFGER TDWVMHEYRL DEESQGAAGL QDSFVLCRVV KKNGLETKSD 180 DQSIAQTENN DSSCAKNNTF PDNLALTSYT ENQSKESSSP ILQEDEINKS LRFSKLETPS 240 VTFNDMTKDS NAIERWLDVL LDDPDQNISL TSPVESENNT KFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	18	173	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	18	173	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	18	173	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	18	173	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	18	173	15	169	NAC domain-containing protein 19
3swm_B	1e-53	18	173	15	169	NAC domain-containing protein 19
3swm_C	1e-53	18	173	15	169	NAC domain-containing protein 19
3swm_D	1e-53	18	173	15	169	NAC domain-containing protein 19
3swp_A	1e-53	18	173	15	169	NAC domain-containing protein 19
3swp_B	1e-53	18	173	15	169	NAC domain-containing protein 19
3swp_C	1e-53	18	173	15	169	NAC domain-containing protein 19
3swp_D	1e-53	18	173	15	169	NAC domain-containing protein 19
4dul_A	1e-53	18	173	12	166	NAC domain-containing protein 19
4dul_B	1e-53	18	173	12	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ050379	2e-47	FJ050379.1 Pinus taeda isolate 2125 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050382	2e-47	FJ050382.1 Pinus taeda isolate 2139 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050383	2e-47	FJ050383.1 Pinus taeda isolate 2130 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050385	2e-47	FJ050385.1 Pinus taeda isolate 2127 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050389	2e-47	FJ050389.1 Pinus taeda isolate 2137 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050391	2e-47	FJ050391.1 Pinus taeda isolate 2136 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050394	2e-47	FJ050394.1 Pinus taeda isolate 2135 anonymous locus 0_12960_01 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172336.1	2e-86	PREDICTED: NAC domain-containing protein 86-like
Refseq	XP_026666241.1	5e-86	NAC domain-containing protein 45-like
Swissprot	Q9FFI5	1e-80	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0C9QTT7	2e-99	A0A0C9QTT7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10143_3084 transcribed RNA sequence
STRING	cassava4.1_031698m	5e-85	(Manihot esculenta)
STRING	XP_008813657.1	2e-85	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	5e-85	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]