PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016278-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 246aa    MW: 27383.2 Da    PI: 6.5963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016278-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-134893555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      + + Er+RR ++N+++ +Lr+l+P       +K++Ka++++ A+ YI++L+
  PSME_00016278-RA 48 NIILERKRRGKLNHWLYNLRSLVPFI-----TKMDKASVVKDAITYIQHLE 93
                      5689*********************7.....6*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1742108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.3074392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.56E-124797No hitNo description
PfamPF000101.2E-104893IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-1549110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-154998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
IESASCPENK CDLQNHSQRG NAYSEGSNHH SNGDIKSCKS GSSAANKNII LERKRRGKLN  60
HWLYNLRSLV PFITKMDKAS VVKDAITYIQ HLENQVKEIQ TEIAALQSNN QSDCSLPVIS  120
HEDLSVAEMI EDHSMNAEIP IQAPIMATPG SEHAGQTVLQ VDVCKIDGTR FRITLYCLKQ  180
RYLLSQLMKA LESIQILEIR SSKIISLDGH IVNTVIAEIT KEIEEAEGLK QLILDTASNY  240
GFLRGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-24bHLH family protein