PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016111-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 470aa    MW: 51187.5 Da    PI: 6.8257
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016111-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.39.5e-30155208155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  PSME_00016111-RA 155 RPRLVWTPQLHRRFVDVVSHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 208
                       59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-19152212IPR009057Homeodomain-like
PROSITE profilePS5129410.428152211IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-30154213IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23156208IPR006447Myb domain, plants
PfamPF002495.1E-7158207IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MTKLDDRVTE WEAGLPGPDE LTPLSQVLIT PELACAFSIS PEPCRSQLDV SRASKITMSS  60
LRRQNSAPVG SMKGFPAFSV EQREGLELDG GQTRVNDGGG GQAGVSQAAH VPFGGESSDG  120
GGFKKGRNRE YEEPESPASG FENSSDEHSA RTLKRPRLVW TPQLHRRFVD VVSHLGIKNA  180
VPKTIMQLMN VEGLTRENVA SHLQKYRLYL KRMQGFSNEG PSPSDHLFAS TPVPHNLAAS  240
MFLANHRDEP MQMPMPYGSP LVRTPVVGLA HGHAHGHGHM AAVGMNPSAS YAGFDPHAYG  300
VPYARSIPQR ISSGDHHDSV ADRMEMTSSY HNAKTYLSPD NIKEFVHIKS RLKFGKKSLC  360
VDIDELYHLS SPLLVTIGDD EKIHWGSEED VDGRTCGEVH AATDVVKQEN QADAMMENKH  420
DDTRVVVGTS GTKLKPLGNV KVEDKSPSPT HAHAVGHLSS SVFLLSGLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-33155211157Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256853.18e-92PREDICTED: transcription factor PCL1
TrEMBLA0A0D6QYR71e-137A0A0D6QYR7_ARACU; Uncharacterized protein
STRINGXP_010256853.13e-91(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.25e-67G2-like family protein