PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00015911-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 280aa MW: 31844.3 Da PI: 8.6083

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00015911-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.4e-52	22	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+v+yL+kkv++++l++ ++i+e+d+yk++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nr++ sgyWkatg+dk+++ PSME_00015911-RA 22 LPPGFRFHPTDEELLVHYLEKKVSSSPLPA-SIIAEIDLYKHDPWDLPEKACFGEQEWYFFSPRDRKYPNGARPNRSAGSGYWKATGTDKPIV 113 79**************************.89***********8777899********************************** PP NAM 94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++ g+kk+Lvfy+gr kg kt+W+mheyrl PSME_00015911-RA 114 ITsgskSSQKLGVKKSLVFYEGRPLKGIKTNWIMHEYRL 152 9877777778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-63	17	177	IPR003441	NAC domain
PROSITE profile	PS51005	60.809	22	177	IPR003441	NAC domain
Pfam	PF02365	1.8E-27	23	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MKQQSVEGLP LPTFPHQVLP HLPPGFRFHP TDEELLVHYL EKKVSSSPLP ASIIAEIDLY 60 KHDPWDLPEK ACFGEQEWYF FSPRDRKYPN GARPNRSAGS GYWKATGTDK PIVITSGSKS 120 SQKLGVKKSL VFYEGRPLKG IKTNWIMHEY RLTETMPSKR KRSMRLDDWV LCRIYKKASH 180 SPTVGSYPEV EAPSYSDVQP GQEKMAMPKV GSFSRLLQQS HGPFMENFLS QAMPDPNAAL 240 SHVEEPRVEQ MFELALTENW LSNSELPSGW PVPTVNMWSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-74	22	181	20	172	NAC domain-containing protein 19
3swm_B	3e-74	22	181	20	172	NAC domain-containing protein 19
3swm_C	3e-74	22	181	20	172	NAC domain-containing protein 19
3swm_D	3e-74	22	181	20	172	NAC domain-containing protein 19
3swp_A	3e-74	22	181	20	172	NAC domain-containing protein 19
3swp_B	3e-74	22	181	20	172	NAC domain-containing protein 19
3swp_C	3e-74	22	181	20	172	NAC domain-containing protein 19
3swp_D	3e-74	22	181	20	172	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028120869.1	5e-88	NAC transcription factor 25-like
Swissprot	Q8H4S4	2e-83	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A482ER90	1e-122	A0A482ER90_9SPER; NAC5 domain protein
STRING	ERN03380	6e-87	(Amborella trichopoda)
STRING	Migut.M00864.1.p	5e-87	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	8e-87	NAC domain containing protein 47

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]