PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00015668-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 627aa MW: 70136.5 Da PI: 4.8634

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00015668-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	68	1.5e-21	452	500	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +++Wt ++H++Fv+av+qL G ++ +P++ilelmkv+gLt+++v+SHLQ PSME_00015668-RA 452 LKVEWTMNMHRCFVQAVQQL-GVDQGIPSRILELMKVDGLTRHNVASHLQ 500 5899**************.*************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.588	448	507	IPR017930	Myb domain
SuperFamily	SSF46689	5.73E-12	449	501	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-20	449	500	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.2E-20	451	501	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MTGYYMQKYR SHRRHILPRE DEVAADDIGS ILILHRLELS KDFPKGLRVL VLDENTEVAA 60 ETKSRLEGFE YVVSTFSSET EALAVFANET NSFHVALVED FPKGLRFLVL DEDIEAAAET 120 KSRLEGFEYV VSTFSSETEA LAVFANETNY FHVALVEDFP KGLRFLVLDE DIEAAAETKS 180 RLEGFEYVVS TFSNKTEALV VVANETNSFH VALVEVSTDS YDGSKTEAST LHEVQSFTPI 240 PTDSIKQDTS IEPCNSEKFP APSTLQLEQG GRSPSEEDKT LRLDDTKSIK AGTTHADNNC 300 EYETIRELRL EAEATSAWSS QVDSPASVKK ETQDMYRISL KTRNSTQCGM KSVDRTSDRL 360 GNEITSRVTS LHLRFENVDV QVVNAPGIAE EEAGSVEGSK SDDENIEKEA ILSSYACNEE 420 NVDSSREDIK GKKNNIEHDC KKSNIASSKK KLKVEWTMNM HRCFVQAVQQ LGVDQGIPSR 480 ILELMKVDGL TRHNVASHLQ TILEAFYTAW TRTKQDETWS RIGNPAVGPI LGYSPVQLHP 540 TPHGTPMGQT LHVWGHPTID QSCSHMWQQL PVGTPTTWQA QDGSFWKHRG VCLDAWGFPT 600 LGMPFYPQPM MGNRLKGTLE KLHLELP

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MTGYYMQKYR SHRRHILPRE DEVAADDIGS ILILHRLELS KDFPKGLRVL VLDENTEVAA  60
ETKSRLEGFE YVVSTFSSET EALAVFANET NSFHVALVED FPKGLRFLVL DEDIEAAAET  120
KSRLEGFEYV VSTFSSETEA LAVFANETNY FHVALVEDFP KGLRFLVLDE DIEAAAETKS  180
RLEGFEYVVS TFSNKTEALV VVANETNSFH VALVEVSTDS YDGSKTEAST LHEVQSFTPI  240
PTDSIKQDTS IEPCNSEKFP APSTLQLEQG GRSPSEEDKT LRLDDTKSIK AGTTHADNNC  300
EYETIRELRL EAEATSAWSS QVDSPASVKK ETQDMYRISL KTRNSTQCGM KSVDRTSDRL  360
GNEITSRVTS LHLRFENVDV QVVNAPGIAE EEAGSVEGSK SDDENIEKEA ILSSYACNEE  420
NVDSSREDIK GKKNNIEHDC KKSNIASSKK KLKVEWTMNM HRCFVQAVQQ LGVDQGIPSR  480
ILELMKVDGL TRHNVASHLQ TILEAFYTAW TRTKQDETWS RIGNPAVGPI LGYSPVQLHP  540
TPHGTPMGQT LHVWGHPTID QSCSHMWQQL PVGTPTTWQA QDGSFWKHRG VCLDAWGFPT  600
LGMPFYPQPM MGNRLKGTLE KLHLELP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT107884	1e-104	BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.5	5e-32	ARR-B family protein