PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00015661-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 158aa MW: 18413.9 Da PI: 6.7693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00015661-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.3	1.8e-54	6	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yLk k+++ + evi+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatg+d+ PSME_00015661-RA 6 LPPGFRFHPTDEELISCYLKGKLSHGLkAAELEVITEVDLYKCEPWDLPeKsFLPSTDMEWYFYSPRDRKYPNGSRTNRATEAGYWKATGRDR 98 79******************987763555689**********95344556788****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++s + +++g+kktLvfy+grap+ge++dWvmheyrle PSME_00015661-RA 99 KIYS-RASTIGIKKTLVFYRGRAPQGERSDWVMHEYRLE 136 .8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-57	3	142	IPR003441	NAC domain
PROSITE profile	PS51005	54.885	6	155	IPR003441	NAC domain
Pfam	PF02365	5.2E-28	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MGTFALPPGF RFHPTDEELI SCYLKGKLSH GLKAAELEVI TEVDLYKCEP WDLPEKSFLP 60 STDMEWYFYS PRDRKYPNGS RTNRATEAGY WKATGRDRKI YSRASTIGIK KTLVFYRGRA 120 PQGERSDWVM HEYRLEENEC EAGPCLQVLF IIWDAVFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-50	6	135	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103829	1e-170	BT103829.1 Picea glauca clone GQ02802_M02 mRNA sequence.
GenBank	BT105827	1e-170	BT105827.1 Picea glauca clone GQ02829_B02 mRNA sequence.
GenBank	EF676765	1e-170	EF676765.1 Picea sitchensis clone WS02751_F10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020248886.1	2e-74	NAC domain-containing protein 86-like isoform X1
Refseq	XP_020248888.1	2e-75	NAC domain-containing protein 86-like isoform X2
Swissprot	A4VCM0	2e-69	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	B8LLW8	1e-99	B8LLW8_PICSI; Uncharacterized protein
STRING	Lus10007377	7e-74	(Linum usitatissimum)
STRING	MLOC_71128.1	7e-75	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-72	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]