PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015503-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 209aa    MW: 23428.9 Da    PI: 4.9795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015503-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-162676155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++kG+r +k +g+W +eIr p++   r +++lg++ tae+Aa+a++aa  +l+g
  PSME_00015503-RA 26 PQFKGIRLRK-WGSWGSEIRIPKT---REKIWLGSYKTAEQAARAYDAAVYCLRG 76
                      689*****99.**********965...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-92676IPR001471AP2/ERF domain
CDDcd000186.20E-242683No hitNo description
Gene3DG3DSA:3.30.730.106.7E-262784IPR001471AP2/ERF domain
SMARTSM003802.5E-262790IPR001471AP2/ERF domain
PROSITE profilePS5103220.0732784IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-172785IPR016177DNA-binding domain
PRINTSPR003671.3E-72839IPR001471AP2/ERF domain
PRINTSPR003671.3E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEKFPDSDEH HGHAALTYQG CGQKRPQFKG IRLRKWGSWG SEIRIPKTRE KIWLGSYKTA  60
EQAARAYDAA VYCLRGPNAE FNFSGSVPAI PSAFSLSRRQ IQLAAARYAR DELPSNSTSL  120
SPHNNKSKNK ALEEPDCPTQ SSLVSETVIP NDTGQHISEE WDMALWESLF DGSDCANLEK  180
LPSIDEALGL DANQTLQEEE EHDGFFWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-131983671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1243642e-40BT124364.1 Picea sitchensis clone WS0473_F21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ98e-59D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.13e-33ERF family protein