PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015491-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 737aa    MW: 83604.1 Da    PI: 6.3628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015491-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-0976123147
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 
                       r +WT eEd++l ++++ +  +  W   +++ g++R +k+c++rw++y
  PSME_00015491-RA  76 RRAWTHEEDKILSEYIEIHEDHsVWVNLPQKAGLKRHGKSCILRWLNY 123
                       679*****************99***********99************9 PP

2Myb_DNA-binding37.27e-12130175148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ ++ E+e+l++ + ++G+  W+ Ia +++ gRt++++k+ w+++l
  PSME_00015491-RA 130 RGNISPNEEEILIQMHLLWGNQ-WSPIAGRLP-GRTDNEIKNNWNSHL 175
                       78999***************99.*********.************986 PP

3Myb_DNA-binding32.32.3e-10192240148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                       r +WT+eEd++l ++++ +  +  W+  +++ g++R +k ck+rw++yl
  PSME_00015491-RA 192 RRAWTPEEDKILSEYIEIHEDHsVWENLPQKAGLKRHGKICKLRWLNYL 240
                       679*****************99***********99************97 PP

4Myb_DNA-binding41.23.9e-13445493148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                       r +WT+eEd++l ++++ +G +  W+  +++ g++R +k+c++rw++yl
  PSME_00015491-RA 445 RRAWTPEEDKILSQYIEIHGEHrVWANLPQKAGLKRHGKSCRLRWLNYL 493
                       679*****************99***********99************97 PP

5Myb_DNA-binding52.31.3e-16499544148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E+ell++ +++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00015491-RA 499 RGNISPDEEELLIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 544
                       7899******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.52571124IPR017877Myb-like domain
SuperFamilySSF466893.43E-2075171IPR009057Homeodomain-like
SMARTSM007171.7E-675126IPR001005SANT/Myb domain
PfamPF002494.4E-876123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-1678131IPR009057Homeodomain-like
CDDcd001670.0022178124No hitNo description
PROSITE profilePS5129421.62125179IPR017930Myb domain
SMARTSM007173.0E-10129177IPR001005SANT/Myb domain
PfamPF002493.0E-10130175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-22132179IPR009057Homeodomain-like
CDDcd001673.75E-6134175No hitNo description
PROSITE profilePS5129413.153187244IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-14188243IPR009057Homeodomain-like
SMARTSM007171.6E-6191242IPR001005SANT/Myb domain
SuperFamilySSF466895.49E-15193268IPR009057Homeodomain-like
CDDcd001676.75E-4194240No hitNo description
PfamPF139214.1E-10195257No hitNo description
Gene3DG3DSA:1.10.10.609.8E-6244267IPR009057Homeodomain-like
SMARTSM0071727245294IPR001005SANT/Myb domain
PROSITE profilePS5129411.102440493IPR017930Myb domain
SuperFamilySSF466892.58E-24444540IPR009057Homeodomain-like
SMARTSM007172.8E-10444495IPR001005SANT/Myb domain
PfamPF002496.2E-12445493IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-20447500IPR009057Homeodomain-like
CDDcd001675.28E-7447493No hitNo description
PROSITE profilePS5129426.965494548IPR017930Myb domain
SMARTSM007173.5E-17498546IPR001005SANT/Myb domain
PfamPF002496.9E-15499544IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-25501548IPR009057Homeodomain-like
CDDcd001672.94E-11503544No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MSASGCEDNG GCDGLGYNSG GGDFNDGGGG EGGWDDGGVG DGVGVWLGVK SLTGVCGELL  60
SEEIPTSEGV EEVFNRRAWT HEEDKILSEY IEIHEDHSVW VNLPQKAGLK RHGKSCILRW  120
LNYIHPDIKR GNISPNEEEI LIQMHLLWGN QWSPIAGRLP GRTDNEIKNN WNSHLNKKLA  180
MKESEQEEVF NRRAWTPEED KILSEYIEIH EDHSVWENLP QKAGLKRHGK ICKLRWLNYL  240
RPNIKRGNIS PDEEELLTRM HRLWGNRHLN KKLAMKESER RTQILKKMTT SPSPLQNNVF  300
KRIPVKITMA ARDSQIRMPH GRNNHIPSEA AVKLSNVQET TNSSQSGWCD LLAENLIVDN  360
ESKRIVFQMA HVNHVGTEVT NSICSMPSLE DQKSQLSDDF VASLAHSLMD LDELLFSDIN  420
LFSSPSNCLL TDFGLEDSEE EVFNRRAWTP EEDKILSQYI EIHGEHRVWA NLPQKAGLKR  480
HGKSCRLRWL NYLRPDIKRG NISPDEEELL IRMHRLLGNR WSLIAGRLPG RTDNEIKNYW  540
NTHLRKKLAI KESERRTLAM KESERRTQIL KRRATSPSPL QNHVFKPSPV KIPMAARDSE  600
IGRPNGCCNG DGSNHIPAEA AVKLSNVQET TNSSQSGWCD LYAKNSIVDN ESKLIVFEMV  660
HVNHVGTEVT NSTCSMSSLE DGRQSPLFDD FAQSLTDLDE LLFPDINLLS SPSNCLLTDF  720
GLEEFYKGQA FIDSRHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-207454825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324191.32e-61transcription factor MYB74
SwissprotQ9S9K94e-46MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A167V9013e-88A0A167V901_PICAB; Transcription factor MYB30
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-49myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]