PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00015491-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 737aa MW: 83604.1 Da PI: 6.3628 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.6e-09 | 76 | 123 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 r +WT eEd++l ++++ + + W +++ g++R +k+c++rw++y PSME_00015491-RA 76 RRAWTHEEDKILSEYIEIHEDHsVWVNLPQKAGLKRHGKSCILRWLNY 123 679*****************99***********99************9 PP | |||||||
2 | Myb_DNA-binding | 37.2 | 7e-12 | 130 | 175 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++ E+e+l++ + ++G+ W+ Ia +++ gRt++++k+ w+++l PSME_00015491-RA 130 RGNISPNEEEILIQMHLLWGNQ-WSPIAGRLP-GRTDNEIKNNWNSHL 175 78999***************99.*********.************986 PP | |||||||
3 | Myb_DNA-binding | 32.3 | 2.3e-10 | 192 | 240 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 r +WT+eEd++l ++++ + + W+ +++ g++R +k ck+rw++yl PSME_00015491-RA 192 RRAWTPEEDKILSEYIEIHEDHsVWENLPQKAGLKRHGKICKLRWLNYL 240 679*****************99***********99************97 PP | |||||||
4 | Myb_DNA-binding | 41.2 | 3.9e-13 | 445 | 493 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 r +WT+eEd++l ++++ +G + W+ +++ g++R +k+c++rw++yl PSME_00015491-RA 445 RRAWTPEEDKILSQYIEIHGEHrVWANLPQKAGLKRHGKSCRLRWLNYL 493 679*****************99***********99************97 PP | |||||||
5 | Myb_DNA-binding | 52.3 | 1.3e-16 | 499 | 544 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E+ell++ +++lG++ W++Ia +++ gRt++++k++w+++l PSME_00015491-RA 499 RGNISPDEEELLIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 544 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.525 | 71 | 124 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.43E-20 | 75 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-6 | 75 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-8 | 76 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-16 | 78 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00221 | 78 | 124 | No hit | No description |
PROSITE profile | PS51294 | 21.62 | 125 | 179 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-10 | 129 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-10 | 130 | 175 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 132 | 179 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.75E-6 | 134 | 175 | No hit | No description |
PROSITE profile | PS51294 | 13.153 | 187 | 244 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-14 | 188 | 243 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-6 | 191 | 242 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.49E-15 | 193 | 268 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.75E-4 | 194 | 240 | No hit | No description |
Pfam | PF13921 | 4.1E-10 | 195 | 257 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-6 | 244 | 267 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 27 | 245 | 294 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.102 | 440 | 493 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-24 | 444 | 540 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-10 | 444 | 495 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-12 | 445 | 493 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 447 | 500 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.28E-7 | 447 | 493 | No hit | No description |
PROSITE profile | PS51294 | 26.965 | 494 | 548 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-17 | 498 | 546 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-15 | 499 | 544 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 501 | 548 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-11 | 503 | 544 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MSASGCEDNG GCDGLGYNSG GGDFNDGGGG EGGWDDGGVG DGVGVWLGVK SLTGVCGELL 60 SEEIPTSEGV EEVFNRRAWT HEEDKILSEY IEIHEDHSVW VNLPQKAGLK RHGKSCILRW 120 LNYIHPDIKR GNISPNEEEI LIQMHLLWGN QWSPIAGRLP GRTDNEIKNN WNSHLNKKLA 180 MKESEQEEVF NRRAWTPEED KILSEYIEIH EDHSVWENLP QKAGLKRHGK ICKLRWLNYL 240 RPNIKRGNIS PDEEELLTRM HRLWGNRHLN KKLAMKESER RTQILKKMTT SPSPLQNNVF 300 KRIPVKITMA ARDSQIRMPH GRNNHIPSEA AVKLSNVQET TNSSQSGWCD LLAENLIVDN 360 ESKRIVFQMA HVNHVGTEVT NSICSMPSLE DQKSQLSDDF VASLAHSLMD LDELLFSDIN 420 LFSSPSNCLL TDFGLEDSEE EVFNRRAWTP EEDKILSQYI EIHGEHRVWA NLPQKAGLKR 480 HGKSCRLRWL NYLRPDIKRG NISPDEEELL IRMHRLLGNR WSLIAGRLPG RTDNEIKNYW 540 NTHLRKKLAI KESERRTLAM KESERRTQIL KRRATSPSPL QNHVFKPSPV KIPMAARDSE 600 IGRPNGCCNG DGSNHIPAEA AVKLSNVQET TNSSQSGWCD LYAKNSIVDN ESKLIVFEMV 660 HVNHVGTEVT NSTCSMSSLE DGRQSPLFDD FAQSLTDLDE LLFPDINLLS SPSNCLLTDF 720 GLEEFYKGQA FIDSRHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-20 | 74 | 548 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324191.3 | 2e-61 | transcription factor MYB74 | ||||
Swissprot | Q9S9K9 | 4e-46 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A167V901 | 3e-88 | A0A167V901_PICAB; Transcription factor MYB30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 8e-49 | myb domain protein 3 |