PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00015366-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 1177aa    MW: 128973 Da    PI: 6.4417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00015366-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-17123168147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +g WT eEde+l +av+ + g++Wk+Ia+ ++ gRt+ qc +rwqk+
  PSME_00015366-RA 123 KGGWTLEEDEILRRAVQCYNGKNWKKIAHFFP-GRTDVQCLHRWQKV 168
                       688*****************************.************96 PP
2Myb_DNA-binding63.83.3e-20175221148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEde++vd+vk++G   W++I++ ++ gR +kqc++rw+++l
  PSME_00015366-RA 175 KGPWTKEEDEKIVDLVKKHGAQKWSLISQSVP-GRIGKQCRERWYNHL 221
                       79******************************.*************97 PP
3Myb_DNA-binding57.53.1e-18227269145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       + +WT+eE++ l++a++ +G++ W+ Ia++++ gRt++ +k++w+
  PSME_00015366-RA 227 KEAWTQEEELALIRAHQIYGNK-WAEIAKYLP-GRTDNAIKNHWN 269
                       579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.879118169IPR017930Myb domain
SMARTSM007178.2E-15122171IPR001005SANT/Myb domain
PfamPF002498.4E-15123168IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-16124179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-21125181IPR009057Homeodomain-like
CDDcd001671.68E-13126169No hitNo description
PROSITE profilePS5129432.323170225IPR017930Myb domain
SuperFamilySSF466891.68E-32172268IPR009057Homeodomain-like
SMARTSM007174.6E-18174223IPR001005SANT/Myb domain
PfamPF002492.2E-18175221IPR001005SANT/Myb domain
CDDcd001674.51E-16177221No hitNo description
Gene3DG3DSA:1.10.10.604.6E-26182229IPR009057Homeodomain-like
SMARTSM007171.2E-17226274IPR001005SANT/Myb domain
PROSITE profilePS5129423.547226276IPR017930Myb domain
PfamPF002491.3E-16227270IPR001005SANT/Myb domain
CDDcd001673.75E-14229269No hitNo description
Gene3DG3DSA:1.10.10.606.5E-23230276IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1177 aa     Download sequence    Send to blast
MEVEQQPQPD LEMEREKEAE LEDKKDVEKE AGLKPTKKRR SVMLKLKKVR ETPKEVELEM  60
DSEGDVERPL EGRGAGVGAK AKIIKLEGGN DEACDKANGD SDEAQRLPPV QGPTGGPTRR  120
SSKGGWTLEE DEILRRAVQC YNGKNWKKIA HFFPGRTDVQ CLHRWQKVIN PNLVKGPWTK  180
EEDEKIVDLV KKHGAQKWSL ISQSVPGRIG KQCRERWYNH LNPEIKKEAW TQEEELALIR  240
AHQIYGNKWA EIAKYLPGRT DNAIKNHWNS SAKRKVASYL ASGLLTELPD LPAFRSSTES  300
QRVDERCTDL PVPVPVMEQF SGCNLESASS GANLSGSGNV NRATMQPGYG SLGINQTADT  360
WKLVSKLEGL FRNSVPSGTK TDCNALLAPD KMLKPTTRPS AEVAVSASSY QIKDFPESGN  420
VKTGNGCYVN SSKKCANSFK ISDCPVETSG AEHKMSSVYA CQPSRSIEPA AISSTVCASA  480
FNASVSPGSV TSDVPLTSPV STKEACFSSE KRYKISCQLQ CSSGSRKYDQ LPSVYQPSIR  540
SLKTDVQDEK KAANLSLAAS AVNGMVALDM KAAHPFVQTG TTNSNCLFYG KLLLQNEVAS  600
FPNTDAPSSQ DYTQQGYGSF GVQQIAMASA SCSSPSYSLG SLNDKGPEAI LRNAAKSFIG  660
TPSILRKRPR YSSCLQTNSN DKRVEHVTEN ESFCSSESLS CSPDAHLKSC TSKDNINVAL  720
PFSSEKTSLL SQPKFADKMS SPIMKSEEKR LSCTFESSKH TANTENYSDL GLGKDGFTSE  780
GNNNIYTIRG LDYSREQAHR EAMGEDEAKE FALVGTDEAQ KMKNAAQLQN MQSSGVLEQN  840
LNGQQYSPTT RDNSLIIGSS SDSTMNLSPL SGRGVEMSNN LGDIEGDFDC IPCAVASNLS  900
EYEDQGSARE TSIHQSSMVT SSSSPVHHVF DSFSQNDISN LDKCSVIRDK LKAGTCLGGP  960
LTLKPSSSCN TSFLTQKDST SRVPEDTVLL INMEDRVEDA VGLIERLSEH ASLTYLEAER  1020
FLTAESEKPN ISQTVSSYLD LMFRFNEDET ECKETVSSSH NIVGDESSTH LSDQPLKQVA  1080
KAKSKIGILE AKNADLRATL EAVKEQLLPY DSLILNPTYA KKLVAYPLSQ QPMIELAMKA  1140
NFYKIRHEIQ HKMRATMAVP TGRLLDKSVG ESPELQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-681232766159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-681232766159MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1149330.0BT114933.1 Picea glauca clone GQ03605_J03 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.24e-90myb domain protein 3r-4