PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00015293-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Trihelix

Protein Properties

Length: 565aa MW: 65571 Da PI: 8.6781

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00015293-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.9	5.5e-23	62	159	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +W++++v++Li+++ +++e+ ++++ +kk++W++vsk+m+ +g+ +sp+ C++k+++lnkryk+++++ +++ +++++++ ++ PSME_00015293-RA 62 KWSDSMVRLLITMVLYVGEDGGSECedgskkksgilQKKGKWKSVSKVMMGKGCYVSPQLCEDKFNDLNKRYKRLNDILERGiACRVVENPSL 154 7*******************98778888999999*****************************************989***** PP trihelix 82 fdqle 86 +d++e PSME_00015293-RA 155 LDSME 159 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-16	60	148	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MRGRPHWRGA KFSHSSRLLE SKNTIIWQGR LDGQSSTLDC VVSLKDPLWQ EELRQDPWQR 60 MKWSDSMVRL LITMVLYVGE DGGSECEDGS KKKSGILQKK GKWKSVSKVM MGKGCYVSPQ 120 LCEDKFNDLN KRYKRLNDIL ERGIACRVVE NPSLLDSMEH LSPKVKEDEN ERDEEDEENE 180 DDDDEDIEDT NDENGEDADA EGVGNYSKRR KTPRNAEEVN FWTSPPSHDY VKPSASYSLN 240 SKMMGVLQDN TKTAWERRQW MRNRTMQLEE HKVNYQAQAL ELEKQRFKWE KFYSKKSREL 300 ERMKLENERT KLENGSVPVL PKWASPHRGR AKFSHSSRLS ESKTYYQARE CEDCCPPRRE 360 EARSAIAGEP ARGEKTAAWE MPEPLSAYEG EFFSICQHEG PTYCQKQRPP PLRCRRRRKV 420 PERAKRVATQ EYIKQTPSLP YKASNLSQQN QTDHEGAIRP APDPESWKKP TDLGKNPAAK 480 TLMKPGRIQP WRMDDSMARK FGTPRPHWKA HKSHHDLPLL LEKPLKAQGL AMEERTEHIP 540 YEAAIKEIIS RIGFIDNRAL VLFSP

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MRGRPHWRGA KFSHSSRLLE SKNTIIWQGR LDGQSSTLDC VVSLKDPLWQ EELRQDPWQR  60
MKWSDSMVRL LITMVLYVGE DGGSECEDGS KKKSGILQKK GKWKSVSKVM MGKGCYVSPQ  120
LCEDKFNDLN KRYKRLNDIL ERGIACRVVE NPSLLDSMEH LSPKVKEDEN ERDEEDEENE  180
DDDDEDIEDT NDENGEDADA EGVGNYSKRR KTPRNAEEVN FWTSPPSHDY VKPSASYSLN  240
SKMMGVLQDN TKTAWERRQW MRNRTMQLEE HKVNYQAQAL ELEKQRFKWE KFYSKKSREL  300
ERMKLENERT KLENGSVPVL PKWASPHRGR AKFSHSSRLS ESKTYYQARE CEDCCPPRRE  360
EARSAIAGEP ARGEKTAAWE MPEPLSAYEG EFFSICQHEG PTYCQKQRPP PLRCRRRRKV  420
PERAKRVATQ EYIKQTPSLP YKASNLSQQN QTDHEGAIRP APDPESWKKP TDLGKNPAAK  480
TLMKPGRIQP WRMDDSMARK FGTPRPHWKA HKSHHDLPLL LEKPLKAQGL AMEERTEHIP  540
YEAAIKEIIS RIGFIDNRAL VLFSP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104456	1e-145	BT104456.1 Picea glauca clone GQ02810_J16 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-29	sequence-specific DNA binding transcription factors