PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00015260-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33796.4 Da PI: 4.0652 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.1e-13 | 14 | 60 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT+ Ed++l d+++ +G g W++ +r+ g++R +k+c++rw++yl PSME_00015260-RA 14 GAWTASEDKILSDYINTYGLGGWTSLPRKAGLKRGGKSCRLRWLNYL 60 89*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE+ell++++++lG++ W++Ia +++ gRt++++k++w+++ PSME_00015260-RA 66 RGNISSEEEELLIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 110 7899******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 9.802 | 8 | 60 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-9 | 12 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.06E-26 | 13 | 107 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-21 | 14 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-11 | 14 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.83E-7 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.165 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-25 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-11 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MMGRSGSKDV LNSGAWTASE DKILSDYINT YGLGGWTSLP RKAGLKRGGK SCRLRWLNYL 60 RPDIKRGNIS SEEEELLIRL HRLLGNRWSL IAGRLPGRTD NEIKNYWNTH FSKRIQMGEF 120 QPKIQNPCKR RGKIPSCSDE EVQTEKDICR NMPLKINPEA NCLKVVDDHN VEIDTSKSWC 180 QLLLEDCIGD YSYDRLDLTN GVQANNIIGT DEHQQLPSQA PAWLSKILEE KHCSSSCDDD 240 DDDDDDDNGE DDEGDDDDDE GDDDAAAADD DDEDDDDDED EHDDNDHDDR GDVDDDDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 11 | 115 | 5 | 108 | B-MYB |
1h8a_C | 3e-23 | 11 | 115 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022750050.1 | 6e-60 | trichome differentiation protein GL1-like | ||||
TrEMBL | A0A2H4Z0B0 | 3e-88 | A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor | ||||
STRING | EMJ05745 | 4e-58 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-43 | myb domain protein 3 |