PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00014950-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 18054.5 Da PI: 5.5776 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.5 | 4.4e-38 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaa k++r+kC ++Cv+apyfp+e+ kf vh++FG +nv+kll++lp e+r +a++s+vyeA+ r+rdPv+G++gvi++l++++e+l+++ PSME_00014950-RA 11 ACAARKMQRKKCGENCVIAPYFPQEDLDKFLLVHRVFGKANVTKLLQDLPVEQRVEAVKSIVYEARERVRDPVHGCFGVINDLHKKIEELQSK 103 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e PSME_00014950-RA 104 LAAAEAE 110 *999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.103 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-36 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MNMSSTLPTA ACAARKMQRK KCGENCVIAP YFPQEDLDKF LLVHRVFGKA NVTKLLQDLP 60 VEQRVEAVKS IVYEARERVR DPVHGCFGVI NDLHKKIEEL QSKLAAAEAE AGLAANIQSL 120 TTLYYHEASE AAHEFNNASL HDLYDDVDPL QLWEPLWTSS A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-32 | 10 | 110 | 10 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-32 | 10 | 110 | 10 | 110 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253003.1 | 1e-40 | PREDICTED: LOB domain-containing protein 1-like | ||||
TrEMBL | B8LQI9 | 2e-51 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-38 | LOB domain-containing protein 1 |