PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00014838-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 379aa MW: 43031.8 Da PI: 6.824 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.7e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++v+ +G g+W+t+++ g+ R++k+c++rw +yl PSME_00014838-RA 13 RGLWSPEEDEKLVRYVATHGHGCWSTVPKQAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ ++da++ lG++ W+ I+r+++ gRt++++k++w++ PSME_00014838-RA 66 RGSFSPQEERTIIDAHRVLGNR-WAQISRHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.551 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-17 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.49E-12 | 16 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.705 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-10 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MGHRCCSKQK VKRGLWSPEE DEKLVRYVAT HGHGCWSTVP KQAGLQRCGK SCRLRWINYL 60 RPDLKRGSFS PQEERTIIDA HRVLGNRWAQ ISRHLPGRTD NEVKNFWNSC MRKKLLAQGI 120 DPKTHRPISE LEKHEHKPST WSSEPSSGFR DSSCRPNSDL ELGEAMTEGI MYTTDAVRGE 180 NLGLASYGLV PVNGGIERYP SLYEQGQTLQ EDVNFQLSFA KKDERDGNLN GNSETKFHAQ 240 ANDGNSEISR FEEKPYFSFD QTLSAHCIEQ LEIGSSSYES DHPLIRPVNE LEAAAMRFNA 300 DHHHMNPPNL EAHTKPMHLP KVNENEFNSQ QLQASNYHQY QNQYLISYSS SASSAYGEHN 360 LDADLSLHSS IPIGIYFGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 13 | 115 | 7 | 108 | B-MYB |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT116273 | 1e-152 | BT116273.1 Picea glauca clone GQ03715_B15 mRNA sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 5e-77 | myb domain protein 67 |