PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00014725-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 308aa MW: 35079 Da PI: 4.7791

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00014725-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.1	1.9e-54	23	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGf FhPtdeelv +yLk+kv+g k+el ++i+evd+yk+ePwdLp k ++++++ +w+fF++rd+ky++g+r+nrat++gyWkatg+d++ PSME_00014725-RA 23 LPPGFGFHPTDEELVAYYLKRKVQGYKIEL-DIIPEVDLYKCEPWDLPdKiCISSKDLQWHFFCPRDRKYPNGSRTNRATEAGYWKATGRDRK 114 79**************************.99**********95346777778******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s ++ ++g+kktLvf++grap ge+tdWvmheyrl PSME_00014725-RA 115 VNS-QRGKIGTKKTLVFHRGRAPFGERTDWVMHEYRL 150 .7779**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-61	17	172	IPR003441	NAC domain
PROSITE profile	PS51005	58.36	23	172	IPR003441	NAC domain
Pfam	PF02365	3.0E-28	24	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MKDCSNIIFL TQISFNLMAP ISLPPGFGFH PTDEELVAYY LKRKVQGYKI ELDIIPEVDL 60 YKCEPWDLPD KICISSKDLQ WHFFCPRDRK YPNGSRTNRA TEAGYWKATG RDRKVNSQRG 120 KIGTKKTLVF HRGRAPFGER TDWVMHEYRL DEESQGAAGL QDSFVLCRVV KKNRLETKSD 180 DQSIAQTENN DSSYAKNNTF PDNLALTSYT ENQSTESSSP ILQEDEINKS LRFSKPETPS 240 ATFNDMTEDS NAIERWLDVL LDDPDQNVSL TSPVESENNT KEDNSPGKWE LLKDQAFDAQ 300 IVSIPTGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-55	18	173	15	169	NAC domain-containing protein 19
3swm_B	2e-55	18	173	15	169	NAC domain-containing protein 19
3swm_C	2e-55	18	173	15	169	NAC domain-containing protein 19
3swm_D	2e-55	18	173	15	169	NAC domain-containing protein 19
3swp_A	2e-55	18	173	15	169	NAC domain-containing protein 19
3swp_B	2e-55	18	173	15	169	NAC domain-containing protein 19
3swp_C	2e-55	18	173	15	169	NAC domain-containing protein 19
3swp_D	2e-55	18	173	15	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ050379	3e-52	FJ050379.1 Pinus taeda isolate 2125 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050382	3e-52	FJ050382.1 Pinus taeda isolate 2139 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050383	3e-52	FJ050383.1 Pinus taeda isolate 2130 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050385	3e-52	FJ050385.1 Pinus taeda isolate 2127 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050389	3e-52	FJ050389.1 Pinus taeda isolate 2137 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050391	3e-52	FJ050391.1 Pinus taeda isolate 2136 anonymous locus 0_12960_01 genomic sequence.
GenBank	FJ050394	3e-52	FJ050394.1 Pinus taeda isolate 2135 anonymous locus 0_12960_01 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316554.1	6e-86	NAC domain-containing protein 71 isoform X2
Refseq	XP_019172336.1	1e-86	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-80	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0C9QTT7	1e-98	A0A0C9QTT7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10143_3084 transcribed RNA sequence
STRING	evm.model.supercontig_178.32	4e-85	(Carica papaya)
STRING	XP_008813657.1	3e-85	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	5e-85	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]