PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014669-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 343aa    MW: 39059.7 Da    PI: 6.7316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014669-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-123279148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT++Ed +l ++++ +G g W+  +++ g +R +k+c++rw +yl
  PSME_00014669-RA 32 RGAWTKQEDMILSEYIRIHGVGEWRNLPQKAGIKRRGKSCRLRWVNYL 79
                      89******************************55************97 PP
2Myb_DNA-binding49.21.2e-1585130148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + eE+el+++ +++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00014669-RA  85 RGSISGEEEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 130
                       566677****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.1572779IPR017930Myb domain
SuperFamilySSF466891.36E-2629126IPR009057Homeodomain-like
SMARTSM007171.6E-113181IPR001005SANT/Myb domain
PfamPF002495.3E-123279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-203386IPR009057Homeodomain-like
CDDcd001672.89E-83479No hitNo description
PROSITE profilePS5129425.61780134IPR017930Myb domain
SMARTSM007177.8E-1684132IPR001005SANT/Myb domain
PfamPF002496.2E-1485130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2587134IPR009057Homeodomain-like
CDDcd001671.17E-1189130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MIYGDIQLWS YRKRISRMGR SPCCSKELGL NRGAWTKQED MILSEYIRIH GVGEWRNLPQ  60
KAGIKRRGKS CRLRWVNYLR PDIKRGSISG EEEELIIRMH RLLGNRWSLI AGRLPGRTDN  120
EIKNYWNTHL SKKLQSTSHS DQPNSSAQNL ISRSKSPSLL QNHVFKTPPG LKITTTVKQV  180
EMASPKGCSN SSRDEAFKFC NVKETTDDDS EHIPFAVADV SLVETEVKSS TCSMSDQQSS  240
HSDHFAGDAA TLTENSLYLN ELSSPHWNLL FSPSDCSIDF GLEEFYRGLA TMATETIEFQ  300
DLYSSDQSNM QSINSFTASD CQQMEEFHDN AQHKDWIGEL NYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25301365110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1312191e-108KU131219.1 Picea abies transcription factor MYB30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9011e-133A0A167V901_PICAB; Transcription factor MYB30
STRINGevm.model.supercontig_25.1144e-67(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-59myb domain protein 3