PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014640-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 320aa    MW: 36149 Da    PI: 6.7945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014640-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-142471148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd +l++++ + G g+W+  ar  g++R++k+c++rw +yl
  PSME_00014640-RA 24 KGPWTIEEDMRLIHYISLQGEGRWNFLARAAGLKRSGKSCRLRWVNYL 71
                      79********************************************97 PP
2Myb_DNA-binding46.11.1e-1478120246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g  T+eE+ l++++  ++G++ W++Ia++++ gRt++++k++w++
  PSME_00014640-RA  78 GGITPEEERLIIHLQGRWGNR-WSRIAKKLP-GRTDNEIKNYWRT 120
                       667******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3591971IPR017930Myb domain
SMARTSM007172.3E-112373IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-2923118IPR009057Homeodomain-like
PfamPF002495.3E-132471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-212578IPR009057Homeodomain-like
CDDcd001671.15E-82671No hitNo description
PROSITE profilePS5129423.58972126IPR017930Myb domain
SMARTSM007173.1E-1476124IPR001005SANT/Myb domain
PfamPF002494.2E-1378120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2379125IPR009057Homeodomain-like
CDDcd001671.61E-1181120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTTPSGLPVV TKLIKQEEFE IMRKGPWTIE EDMRLIHYIS LQGEGRWNFL ARAAGLKRSG  60
KSCRLRWVNY LRPDLKRGGI TPEEERLIIH LQGRWGNRWS RIAKKLPGRT DNEIKNYWRT  120
RIKKKFLENS HHGNQLLKHA EMCSSSNFLS PFMPKSEPEE ATPTSANWPC GTAGSMQITR  180
NASVYFDQRP VNYSPITEID IGPVNSIVID HGNDDVHSGT GEIVDSWKTI YDHQNLSLSR  240
FVPAQGAPAI VDVLPHNDAD MPLEIDSFMA SLSECQAEKI EMDGAVPSSS FSVLDGFEGI  300
LSQSILTPWP STSKWNLEFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-252212625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QR051e-79A0A0D6QR05_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-56myb domain protein 21