PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00014620-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LSD | ||||||||
Protein Properties | Length: 151aa MW: 16666.5 Da PI: 4.585 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 25.5 | 2.2e-08 | 135 | 151 | 1 | 17 |
zf-LSD1 1 CggCrtlLsYPrGApsV 17 C+gCrtlL YP GAp+V PSME_00014620-RA 135 CSGCRTLLVYPQGAPNV 151 ***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.3E-8 | 132 | 151 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.3E-7 | 135 | 151 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDRGFSYIEH FPLKRVSIGP EFQAEIHVWN GPPKQSQTQT INEDSNFNEN MDDSRGIQNR 60 VIPDNIDSDD DESEMGSVDN SNIQKSKVSG TKSKMCMPRT KYSGNESSNG ACCINTQNCE 120 LVPLPPPNVQ GQLVCSGCRT LLVYPQGAPN V |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117073 | 3e-57 | BT117073.1 Picea glauca clone GQ03812_E19 mRNA sequence. |