PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00014504-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 76aa MW: 8605.56 Da PI: 7.5097 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.8 | 4.3e-07 | 22 | 59 | 5 | 44 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 + +E++l+ +++++lG + W++Ia +++ R ++++ ++ PSME_00014504-RA 22 SSDEQDLINRLHNLLGDK-WALIAGRLP-WRRPEEIENYC 59 679*************99.*********.99998887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0057 | 17 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.97E-5 | 20 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.098 | 22 | 67 | IPR017877 | Myb-like domain |
CDD | cd00167 | 7.46E-4 | 22 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-8 | 22 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-6 | 22 | 60 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MGGSSVEYSK KSACAAPDHD ISSDEQDLIN RLHNLLGDKW ALIAGRLPWR RPEEIENYCK 60 TRWQAGYTLH TSSSRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109362 | 3e-49 | BT109362.1 Picea glauca clone GQ03207_J20 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NQX0 | 9e-16 | A9NQX0_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 9e-14 | MYB_related family protein |