PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00014434-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YC

Protein Properties

Length: 124aa MW: 14855.2 Da PI: 6.1042

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00014434-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	64.7	1.8e-20	5	59	1	52
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskace 52 ql++fw q ie+++d+knh+ Plarikki+kadedv mis eaP+l+sk+ e PSME_00014434-RA 5 QLHMFWDFQmqeIEQVNDLKNHQPPLARIKKIMKADEDVCMISVEAPALFSKTWE 59 799*98866789************************************977 PP
2	NF-YC	103	2e-32	59	124	9	74
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtl 74 +i+++++fknh+ Plarik+i+kadedv+misaeaP+l++ka e+file+tlrsw+h eenk rtl PSME_00014434-RA 59 EIDQVNNFKNHQQPLARIKQIMKADEDVRMISAEAPILFAKAYEMFILEITLRSWNHIEENKWRTL 124 6899**********************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.19E-9	7	59	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.3E-14	19	60	IPR009072	Histone-fold
Pfam	PF00808	8.6E-6	29	59	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.46E-17	56	124	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.2E-27	62	124	IPR009072	Histone-fold
Pfam	PF00808	5.1E-14	72	124	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MQQQQLHMFW DFQMQEIEQV NDLKNHQPPL ARIKKIMKAD EDVCMISVEA PALFSKTWEI 60 DQVNNFKNHQ QPLARIKQIM KADEDVRMIS AEAPILFAKA YEMFILEITL RSWNHIEENK 120 WRTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-32	59	124	6	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002982931.2	5e-32	nuclear transcription factor Y subunit C-2
Refseq	XP_024542637.1	5e-32	nuclear transcription factor Y subunit C-2
Swissprot	Q9FMV5	8e-32	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A251LCD3	2e-30	A0A251LCD3_MANES; Uncharacterized protein
TrEMBL	D8SEV8	5e-31	D8SEV8_SELML; Uncharacterized protein (Fragment)
STRING	cassava4.1_031452m	3e-31	(Manihot esculenta)
STRING	EFJ16176	9e-32	(Selaginella moellendorffii)
STRING	EFJ17045	9e-32	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	3e-34	nuclear factor Y, subunit C4

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]