PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00014302-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 429aa MW: 47989.3 Da PI: 10.2614

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00014302-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	49.4	1.4e-15	21	66	84	128
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg dk++ +k +++ vg+kk Lvfy +apkg+kt+W+mheyrl PSME_00014302-RA 21 KATGADKPINAKgGKKRVGIKKALVFYARKAPKGSKTNWIMHEYRL 66 89*******966777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	22.459	1	92	IPR003441	NAC domain
Pfam	PF02365	1.2E-6	16	66	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-19	21	92	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MSFLFSFIVY RQSPVWREGM KATGADKPIN AKGGKKRVGI KKALVFYARK APKGSKTNWI 60 MHEYRLADVS RPARKKGSLR LDDWVLCRIY NKKISAEKLA LEKKEGPMDA PMEASDEKDM 120 ENQPASTEVE HNGIEQNNPS SNNLRKLGPS PTSHNAVPPG SYPMNANINL QNDSFQNTTS 180 PFNGSTSKAP VQNIAFNSIP SSINHQWKNY NSTDLVSRLH TDSSSSKPSS SSDPISEKEE 240 VQSRFRVENF SQEQPQSVFN SSLEATECTI ATFANSQRVT KKGKQKVNER TLSDNFRHTS 300 LVRWLLGSPD ASATNLNPKD SFSTTDCSTK AFERRIAETG QMNSAAITRN PVELKRRILM 360 VSLKISNALR ELKRCSMFEL LEILLENRRW LSVPLSPMLF CIPDSSSNEE LGRCKASSSM 420 VSSQRAIAR

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MSFLFSFIVY RQSPVWREGM KATGADKPIN AKGGKKRVGI KKALVFYARK APKGSKTNWI  60
MHEYRLADVS RPARKKGSLR LDDWVLCRIY NKKISAEKLA LEKKEGPMDA PMEASDEKDM  120
ENQPASTEVE HNGIEQNNPS SNNLRKLGPS PTSHNAVPPG SYPMNANINL QNDSFQNTTS  180
PFNGSTSKAP VQNIAFNSIP SSINHQWKNY NSTDLVSRLH TDSSSSKPSS SSDPISEKEE  240
VQSRFRVENF SQEQPQSVFN SSLEATECTI ATFANSQRVT KKGKQKVNER TLSDNFRHTS  300
LVRWLLGSPD ASATNLNPKD SFSTTDCSTK AFERRIAETG QMNSAAITRN PVELKRRILM  360
VSLKISNALR ELKRCSMFEL LEILLENRRW LSVPLSPMLF CIPDSSSNEE LGRCKASSSM  420
VSSQRAIAR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-26	21	98	99	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-26	21	98	99	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-26	21	98	99	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-26	21	98	99	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-26	21	98	102	174	NAC domain-containing protein 19
3swm_B	2e-26	21	98	102	174	NAC domain-containing protein 19
3swm_C	2e-26	21	98	102	174	NAC domain-containing protein 19
3swm_D	2e-26	21	98	102	174	NAC domain-containing protein 19
3swp_A	2e-26	21	98	102	174	NAC domain-containing protein 19
3swp_B	2e-26	21	98	102	174	NAC domain-containing protein 19
3swp_C	2e-26	21	98	102	174	NAC domain-containing protein 19
3swp_D	2e-26	21	98	102	174	NAC domain-containing protein 19
4dul_A	2e-26	21	98	99	171	NAC domain-containing protein 19
4dul_B	2e-26	21	98	99	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	O65061	1e-112	O65061_PICMA; ATAF1-like protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	2e-33	NAC family protein