PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00014129-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 364aa MW: 41725.3 Da PI: 7.0865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00014129-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.8e-07	184	228	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +Er+RR ++++ f+ L +llP++ K +K ++L +++Y+ +L PSME_00014129-RA 184 HMLAERNRRVKLKQHFSFLHSLLPNN-----SKKDKYSVLANTTKYMTEL 228 7789*******************8.....6999*********9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.373	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-13	182	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-11	183	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.76E-6	184	232	No hit	No description
Pfam	PF00010	4.6E-5	184	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-6	185	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDSKPTMEIN AVSDSVENYN GRPSSSGMMF QANGQNAAHR NMNADPLCII DDAHFDLPQL 60 YMQSTTETAN SWYSSSCEDM ERFDQLDHCN IYHPLSINAV DNIMSVQQSR LTLCRQSAFG 120 LYLRPAHSLC VNICKQDLMK RSFNFLRKID EKRREAQRLS QAANIEEAHH YNNVSLQNKA 180 SFQHMLAERN RRVKLKQHFS FLHSLLPNNS KKDKYSVLAN TTKYMTELKS RVDELEKRNR 240 VLEESLRKNV SNKEGCSSLG LRGDEVLTTI VYSSDEVVLG RAKNIPNQLD IQINVQIDPL 300 SSPTSLLILL LEQLKELQLE VVSVESNIQT FTLQAHLLIK QLEGDEWESS KWKSLAEVVR 360 RTFI

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDSKPTMEIN AVSDSVENYN GRPSSSGMMF QANGQNAAHR NMNADPLCII DDAHFDLPQL  60
YMQSTTETAN SWYSSSCEDM ERFDQLDHCN IYHPLSINAV DNIMSVQQSR LTLCRQSAFG  120
LYLRPAHSLC VNICKQDLMK RSFNFLRKID EKRREAQRLS QAANIEEAHH YNNVSLQNKA  180
SFQHMLAERN RRVKLKQHFS FLHSLLPNNS KKDKYSVLAN TTKYMTELKS RVDELEKRNR  240
VLEESLRKNV SNKEGCSSLG LRGDEVLTTI VYSSDEVVLG RAKNIPNQLD IQINVQIDPL  300
SSPTSLLILL LEQLKELQLE VVSVESNIQT FTLQAHLLIK QLEGDEWESS KWKSLAEVVR  360
RTFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-10	bHLH family protein