PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00014053-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 622aa    MW: 70177.5 Da    PI: 4.0858
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00014053-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.88.9e-12120169148
                       TSSS-HHHHHHHHHHHHH...TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkq...lGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+W++eEd++l+ ++ +   lGg +W+ +a+  g+ R +k+c++rw +yl
  PSME_00014053-RA 120 KGPWSPEEDDKLISYIIKnslLGG-SWSYVAKQAGLQRYGKSCRLRWINYL 169
                       79**************87332565.5***********************97 PP
2Myb_DNA-binding42.41.6e-13175218146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ +++E++l+++++  lG++ W  Ia+ ++ gRt++++k++w++
  PSME_00014053-RA 175 RGAISPQEEQLIIHLHSILGNR-WCQIAANLP-GRTDNDIKNYWNS 218
                       7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.763115169IPR017930Myb domain
SuperFamilySSF466895.47E-25117216IPR009057Homeodomain-like
SMARTSM007179.1E-6119171IPR001005SANT/Myb domain
PfamPF002494.3E-10120169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-20121176IPR009057Homeodomain-like
PROSITE profilePS5129423.889170224IPR017930Myb domain
SMARTSM007171.7E-14174222IPR001005SANT/Myb domain
PfamPF002493.1E-12175218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-23177224IPR009057Homeodomain-like
CDDcd001673.77E-10179217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MMIDDHGDDD DDDEDEYEDD DHVDDDDDDD ADDDDDNGDD DVYDVDVEDD DDEDDDDDDD  60
HVDDDEEGDD DDDDDEDDVD DDDGDDDVHD VDHKRIWLKM KRAERHGQGA PFPSKPELRK  120
GPWSPEEDDK LISYIIKNSL LGGSWSYVAK QAGLQRYGKS CRLRWINYLR PGLKRGAISP  180
QEEQLIIHLH SILGNRWCQI AANLPGRTDN DIKNYWNSCI KKKLQKHSLP SSSIHCNVNA  240
NTKSNIPSKY DRTGNMQSLS AHPHPHPLDD YTSFHSAQPL DAMPQGYSLL RHNSINMATR  300
TENTQHCVPA VSELQQEQVH QDQKCHEFSI ERQPSNNQLI SCSQLWIDSC SHTNYESFTQ  360
AITSPILQAQ GESYKTGASS KCDQLVESWT TLPLHETVGS GHNSVGCTIT IPAFVEISDS  420
RNIENDGDII NESEMIMTDY SSFTAYSSGV TEWSANYLNP NTTVFTDACR AKGEFSILGE  480
YGNQQRGKNA NQSCLPFESR SQFNAAPSII RSDVDMYCQV QDSGYWQDCI ILSNDEFKLE  540
EGMKDGDKWD SSTNPYKEEK AGFVNNSSTL GRGGCGTLEF DCEGEASRQV SFWEKDHLYN  600
SCTDTPAPSD LDHILFNWLG MH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-261162243108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE84e-86A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-49myb domain protein 46