PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00014050-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 71aa MW: 8176.36 Da PI: 10.104 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 9.9e-08 | 21 | 55 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkg 34 +g W++eEd++l+ ++ + G +W+ +a+ g + PSME_00014050-RA 21 KGLWSPEEDDKLISYIIKNGLLgrSWSYVAKQAG-N 55 678*****************7788********99.3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.48E-6 | 16 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.917 | 16 | 65 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-9 | 19 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 21 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00406 | 24 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MKRAERHGQG APFPSKPELR KGLWSPEEDD KLISYIIKNG LLGRSWSYVA KQAGNYLNTH 60 IHSFLNHIIP Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.2 | 2e-11 | myb domain protein 55 |