PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00014014-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 393aa MW: 43121.1 Da PI: 10.0305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00014014-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	202	246	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ErrRR++++++fe Lr+++P+ K + a+iL ++e++ sL PSME_00014014-RA 202 HMNSERRRRQKLKESFEALRSVIPPG-----SKKTMASILSYTTEHLTSL 246 6678******************95.....4888899*****99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.948	197	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.03E-10	199	247	No hit	No description
SuperFamily	SSF47459	5.89E-14	200	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-13	201	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.6E-7	202	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-8	203	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MSASPIISVP MPTPATSIST SPSRSSLLSP SIDTSRSSSM VSYLQYPTIS RGDQINIPQD 60 THQYSTSASE LVGGFYPYNL QTLQLPPSSW HFINGHVHKR TLVYPVSSHQ ISVPGPQLFP 120 QTSEVSGFPV SQLARNMMLS AFGMWKPPKK VLNPTVVEGQ YRLKRCLAIL KNIQAERVGQ 180 TSMSGSYRRP PGETLSSGQV HHMNSERRRR QKLKESFEAL RSVIPPGSKK TMASILSYTT 240 EHLTSLKSHA EELEERNKQL ESKLNKLKRA QSSAVQQQGS TTSDGGHSVV TVEVSKIGGS 300 SNTACDEMEI VVAVERPANT IDLMIALLKR LREMGVPLIS LATSTAHPHP ENDPSCLQFR 360 MTATIKLQDQ EVERLKEGLT SAVRKDGGPA QPP

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MSASPIISVP MPTPATSIST SPSRSSLLSP SIDTSRSSSM VSYLQYPTIS RGDQINIPQD  60
THQYSTSASE LVGGFYPYNL QTLQLPPSSW HFINGHVHKR TLVYPVSSHQ ISVPGPQLFP  120
QTSEVSGFPV SQLARNMMLS AFGMWKPPKK VLNPTVVEGQ YRLKRCLAIL KNIQAERVGQ  180
TSMSGSYRRP PGETLSSGQV HHMNSERRRR QKLKESFEAL RSVIPPGSKK TMASILSYTT  240
EHLTSLKSHA EELEERNKQL ESKLNKLKRA QSSAVQQQGS TTSDGGHSVV TVEVSKIGGS  300
SNTACDEMEI VVAVERPANT IDLMIALLKR LREMGVPLIS LATSTAHPHP ENDPSCLQFR  360
MTATIKLQDQ EVERLKEGLT SAVRKDGGPA QPP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-17	bHLH family protein