PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013917-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 568aa    MW: 61797.6 Da    PI: 6.6093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013917-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12389438255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h   Er+RR+ +N+ +++ r+llP +      K +K +i+ ++++YI++Lq
  PSME_00013917-RA 389 RGMHILSERQRRSGMNQLLSNMRSLLPDQ----IAKSDKTSIVAETINYIQYLQ 438
                       889*************************9....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-11386442No hitNo description
PROSITE profilePS5088813.872387437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12389441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9389438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12389451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-9393443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MLGIKPPILV ISPGSLIYMA ENQLDPDWML MQVGTVGVAT IIEWLTDVLS SGTNVGIDPV  60
NVVADSSLDQ VWSDIHKPKF HTYTQAAMVE YFLAHTSVGK REDEEDDGLN QGWGSTDHIF  120
NGICACRIET TTSRMAAISP LTPTICGIIS SDLKAAIAFD VRLSRTSIEK TKMNMTGPYN  180
IGCATGSYTQ KAKMHFQLGA ANSEFPPLGI GKRTQAADYG MSIGLHPMAF DHSLPSLHFF  240
NASSHGGSEV ETLVKLPASE VETLVKFPPL EAAQMDDLSA VVTKCTNPTV FTKLYPYPGF  300
IPTSGCGAVN SSPLESAFVY LQDSIDGDNN RTANCIIPKI GVEAAQPVPQ FPSNERMDGR  360
VQDAEDLKVK SPKRKRCGGA QTSAVVSERG MHILSERQRR SGMNQLLSNM RSLLPDQIAK  420
SDKTSIVAET INYIQYLQQR LSTCSKKRTR SGSSHQAGPS TANIMLSTPN SSDSAILPEM  480
SLKSHAAYKE LFITITCAKK ANLLPSIIVV MEEHNLEVMD AFVSTNDRVA FYSLHLKALQ  540
ALDAAGRRAL TDTLHMLIKS EHQISLEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABF71e-145D5ABF7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.37e-11bHLH family protein