PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013880-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 173aa    MW: 19126.9 Da    PI: 6.2333
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013880-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.18.3e-40191181100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++r+kC ++Cv+apyfp+e+  kf  vh++FG +nv+kll++lp e+r +a++s+vyeA+ r+rdPv+G++gvi++l++++e+l+++
  PSME_00013880-RA  19 ACAACKMQRKKCGENCVVAPYFPQEDLDKFLLVHRVFGKANVIKLLQDLPVEKRGEAVNSIVYEARERVRDPVHGCFGVINDLHKKIEELQSK 111
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  PSME_00013880-RA 112 LAAAEAE 118
                       *999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575120No hitNo description
PROSITE profilePS5089125.27418119IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3819116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVISRGIVLQ MNSTLSASAC AACKMQRKKC GENCVVAPYF PQEDLDKFLL VHRVFGKANV  60
IKLLQDLPVE KRGEAVNSIV YEARERVRDP VHGCFGVIND LHKKIEELQS KLAAAEAEAG  120
LAANMQSVQH ANLISTLEAN SATAHEFSNA SLHALDDDVD PLQLWEPLWT FKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-33161188110LOB family transfactor Ramosa2.1
5ly0_B8e-33161188110LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224697.12e-44PREDICTED: LOB domain-containing protein 1-like
TrEMBLB8LQI92e-59B8LQI9_PICSI; Uncharacterized protein
STRINGXP_008224697.17e-44(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-41LOB domain-containing protein 1