PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00013688-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family BES1
Protein Properties Length: 359aa    MW: 38222.7 Da    PI: 7.7831
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00013688-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822188.13.4e-5831342148
            DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 
                       ++ r ptwkErEnnk+RERrRRaiaakiyaGLR++Gnyklpk++DnneVlkALc+eAGw ve+DGttyrkg+kp+e+ e+agss s+sp ss+
  PSME_00013688-RA   3 SGSRLPTWKERENNKKRERRRRAIAAKIYAGLRMYGNYKLPKHCDNNEVLKALCAEAGWNVEEDGTTYRKGCKPTERIEVAGSS-SVSPASSY 94 
                       789************************************************************************888888765.78999999 PP

            DUF822  95 qsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148
                       +        +sp++sy++sp+sssf    +        a+sl+p+l++ls++ss
  PSME_00013688-RA  95 H--------PSPAPSYQPSPASSSFEPAGTGA------ASSLIPWLKNLSSASS 134
                       9........9**********999986554422......2567888888877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.0E-564121IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTSGSRLPTW KERENNKKRE RRRRAIAAKI YAGLRMYGNY KLPKHCDNNE VLKALCAEAG  60
WNVEEDGTTY RKGCKPTERI EVAGSSSVSP ASSYHPSPAP SYQPSPASSS FEPAGTGAAS  120
SLIPWLKNLS SASSASSSGR LIHAGGSISA PVTPPLSSPT GRGARAKLDW DAMVKAVANE  180
SNDCPNSGFS TPVSPWSNFV ASSTPASPGR HAEMATQLSN AVVDKGRWMG GIRMMMPFPS  240
AGPSSPTFNL LTPAAQLQHS LASEGGRLWT PGQSGVSSPC NNRIGEEEAL LLPPFQECMD  300
ASDEFAFGSV AVKPWQGERI HEECGGEIGS DDLELTLGSF SSSSSKLRSD REPLFSLKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-25687372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-25687372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-25687372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-25687372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0825840.0EF082584.1 Picea sitchensis clone WS0287_O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352718.12e-97PREDICTED: BES1/BZR1 homolog protein 4-like
SwissprotQ9ZV884e-75BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA9NMS90.0A9NMS9_PICSI; Uncharacterized protein
STRINGXP_009352718.18e-97(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-57BES1/BZR1 homolog 4